Cluster: HRGMv2_0156_CGC103
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_01568
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4410 | 5735533 | 5738775 | + | 1.B.14.6.1 |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4411 | 5738787 | 5740262 | + | 8.A.46.1.2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4412 | 5740299 | 5741678 | + | DUF5016 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4413 | 5741717 | 5744227 | + | GH20 |
| CAZyme | HRGMv2_0156_1 | HRGMv2_0156_1_4414 | 5744248 | 5745876 | + | GH20 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4415 | 5745898 | 5747013 | + | HGSNAT_cat | DUF5009 |
| NULL(UNKNOWN) | HRGMv2_0156_1 | HRGMv2_0156_1_4416 | 5747140 | 5748753 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4417 | 5748833 | 5749867 | - | 8.A.1.1.2 |
| pfam | HRGMv2_0156_1 | HRGMv2_0156_1_4418 | 5749947 | 5751266 | - | OEP | OEP |
| TC | HRGMv2_0156_1 | HRGMv2_0156_1_4419 | 5751832 | 5753040 | + | 2.A.1.2.97 |
Gene ID: HRGMv2_0156_1_4410
Type: TC
Location: 5735533 - 5738775 (+)
Type: TC
Location: 5735533 - 5738775 (+)
Gene ID: HRGMv2_0156_1_4411
Type: TC
Location: 5738787 - 5740262 (+)
Type: TC
Location: 5738787 - 5740262 (+)
Gene ID: HRGMv2_0156_1_4412
Type: pfam
Location: 5740299 - 5741678 (+)
Type: pfam
Location: 5740299 - 5741678 (+)
Gene ID: HRGMv2_0156_1_4413
Type: CAZyme
Location: 5741717 - 5744227 (+)
Type: CAZyme
Location: 5741717 - 5744227 (+)
Gene ID: HRGMv2_0156_1_4414
Type: CAZyme
Location: 5744248 - 5745876 (+)
Type: CAZyme
Location: 5744248 - 5745876 (+)
Gene ID: HRGMv2_0156_1_4415
Type: pfam
Location: 5745898 - 5747013 (+)
Type: pfam
Location: 5745898 - 5747013 (+)
Gene ID: HRGMv2_0156_1_4416
Type:
Location: 5747140 - 5748753 (-)
Type:
Location: 5747140 - 5748753 (-)
Gene ID: HRGMv2_0156_1_4417
Type: TC
Location: 5748833 - 5749867 (-)
Type: TC
Location: 5748833 - 5749867 (-)
Gene ID: HRGMv2_0156_1_4418
Type: pfam
Location: 5749947 - 5751266 (-)
Type: pfam
Location: 5749947 - 5751266 (-)
Gene ID: HRGMv2_0156_1_4419
Type: TC
Location: 5751832 - 5753040 (+)
Type: TC
Location: 5751832 - 5753040 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0156_1_4414 | vegan > omnivore | 1.28261 | 0.00026 |
| HRGMv2_0156_1_4414 | vegetarian > omnivore | 1.11508 | 0.00153 |
| HRGMv2_0156_1_4415 | vegan > omnivore | 1.31401 | 0.00026 |
| HRGMv2_0156_1_4415 | vegetarian > omnivore | 1.06160 | 0.00153 |