Cluster: HRGMv2_0149_CGC8
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0149
- CGC Family ID: CGCFAM_01491
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0149_3 | HRGMv2_0149_3_3 | 3079 | 6426 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0149_3 | HRGMv2_0149_3_4 | 6804 | 6917 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0149_3 | HRGMv2_0149_3_5 | 6983 | 8962 | - | GH51_2 |
| TF | HRGMv2_0149_3 | HRGMv2_0149_3_6 | 9199 | 13395 | + | HTH_AraC |
| TC | HRGMv2_0149_3 | HRGMv2_0149_3_7 | 13970 | 17164 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0149_3 | HRGMv2_0149_3_8 | 17198 | 18949 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_0149_3 | HRGMv2_0149_3_9 | 19023 | 20807 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0149_3 | HRGMv2_0149_3_10 | 20876 | 22777 | + | GH43_4 |
| CAZyme | HRGMv2_0149_3 | HRGMv2_0149_3_11 | 22878 | 23885 | + | GH43_5 |
| CAZyme | HRGMv2_0149_3 | HRGMv2_0149_3_12 | 24052 | 25992 | + | GH97 |
| pfam | HRGMv2_0149_3 | HRGMv2_0149_3_13 | 26089 | 27570 | + | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | CysS_C |
| CAZyme | HRGMv2_0149_3 | HRGMv2_0149_3_14 | 27645 | 30215 | - | CBM32 |
| pfam | HRGMv2_0149_3 | HRGMv2_0149_3_15 | 30277 | 31659 | - | BT_3987-like_N | BT_3987-like_N |
| pfam | HRGMv2_0149_3 | HRGMv2_0149_3_16 | 31673 | 33607 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0149_3 | HRGMv2_0149_3_17 | 33621 | 36773 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0149_3_3
Type: CAZyme
Location: 3079 - 6426 (+)
Type: CAZyme
Location: 3079 - 6426 (+)
Gene ID: HRGMv2_0149_3_4
Type:
Location: 6804 - 6917 (+)
Type:
Location: 6804 - 6917 (+)
Gene ID: HRGMv2_0149_3_5
Type: CAZyme
Location: 6983 - 8962 (-)
Type: CAZyme
Location: 6983 - 8962 (-)
Gene ID: HRGMv2_0149_3_6
Type: TF
Location: 9199 - 13395 (+)
Type: TF
Location: 9199 - 13395 (+)
Gene ID: HRGMv2_0149_3_7
Type: TC
Location: 13970 - 17164 (+)
Type: TC
Location: 13970 - 17164 (+)
Gene ID: HRGMv2_0149_3_8
Type: pfam
Location: 17198 - 18949 (+)
Type: pfam
Location: 17198 - 18949 (+)
Gene ID: HRGMv2_0149_3_9
Type:
Location: 19023 - 20807 (+)
Type:
Location: 19023 - 20807 (+)
Gene ID: HRGMv2_0149_3_10
Type: CAZyme
Location: 20876 - 22777 (+)
Type: CAZyme
Location: 20876 - 22777 (+)
Gene ID: HRGMv2_0149_3_11
Type: CAZyme
Location: 22878 - 23885 (+)
Type: CAZyme
Location: 22878 - 23885 (+)
Gene ID: HRGMv2_0149_3_12
Type: CAZyme
Location: 24052 - 25992 (+)
Type: CAZyme
Location: 24052 - 25992 (+)
Gene ID: HRGMv2_0149_3_13
Type: pfam
Location: 26089 - 27570 (+)
Type: pfam
Location: 26089 - 27570 (+)
Gene ID: HRGMv2_0149_3_14
Type: CAZyme
Location: 27645 - 30215 (-)
Type: CAZyme
Location: 27645 - 30215 (-)
Gene ID: HRGMv2_0149_3_15
Type: pfam
Location: 30277 - 31659 (-)
Type: pfam
Location: 30277 - 31659 (-)
Gene ID: HRGMv2_0149_3_16
Type: pfam
Location: 31673 - 33607 (-)
Type: pfam
Location: 31673 - 33607 (-)
Gene ID: HRGMv2_0149_3_17
Type: TC
Location: 33621 - 36773 (-)
Type: TC
Location: 33621 - 36773 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0149_3_11 | vegetarian > vegan | 1.15337 | 0.03781 |
| HRGMv2_0149_3_13 | vegetarian > vegan | 1.36636 | 0.02968 |