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Cluster: HRGMv2_0149_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0149_45 HRGMv2_0149_45_5 3899 4573 + 9.B.104.1.5
TC HRGMv2_0149_45 HRGMv2_0149_45_6 4548 5441 + 9.B.104.1.2
pfam HRGMv2_0149_45 HRGMv2_0149_45_7 5438 6496 + Exo_endo_phos
peptidase HRGMv2_0149_45 HRGMv2_0149_45_8 6515 8608 + M03.UPA
TC HRGMv2_0149_45 HRGMv2_0149_45_9 8814 11807 + 2.A.6.4.3
TF HRGMv2_0149_45 HRGMv2_0149_45_10 12007 16089 - HTH_AraC
NULL(UNKNOWN) HRGMv2_0149_45 HRGMv2_0149_45_11 16264 17832 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0149_45 HRGMv2_0149_45_12 17853 20885 + 1.B.14.6.1
TC HRGMv2_0149_45 HRGMv2_0149_45_13 20899 22599 + 8.A.46.1.3
CAZyme HRGMv2_0149_45 HRGMv2_0149_45_14 22681 24300 + GH30_4
CAZyme HRGMv2_0149_45 HRGMv2_0149_45_15 24311 26716 + GH2
Gene ID: HRGMv2_0149_45_5
Type: TC
Location: 3899 - 4573 (+)
Gene ID: HRGMv2_0149_45_6
Type: TC
Location: 4548 - 5441 (+)
Gene ID: HRGMv2_0149_45_7
Type: pfam
Location: 5438 - 6496 (+)
Gene ID: HRGMv2_0149_45_8
Type: peptidase
Location: 6515 - 8608 (+)
Gene ID: HRGMv2_0149_45_9
Type: TC
Location: 8814 - 11807 (+)
Gene ID: HRGMv2_0149_45_10
Type: TF
Location: 12007 - 16089 (-)
Gene ID: HRGMv2_0149_45_11
Type:
Location: 16264 - 17832 (+)
Gene ID: HRGMv2_0149_45_12
Type: TC
Location: 17853 - 20885 (+)
Gene ID: HRGMv2_0149_45_13
Type: TC
Location: 20899 - 22599 (+)
Gene ID: HRGMv2_0149_45_14
Type: CAZyme
Location: 22681 - 24300 (+)
Gene ID: HRGMv2_0149_45_15
Type: CAZyme
Location: 24311 - 26716 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0149_45_5 vegetarian > vegan 1.09897 0.03781
HRGMv2_0149_45_6 vegetarian > vegan 1.32097 0.03781

🧭 Explore Read Mapping of CGC

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