dbCAN Logo

Cluster: HRGMv2_0149_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0149_34 HRGMv2_0149_34_15 13133 14407 + 3.A.1.103.5
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_16 14832 15755 + GT2
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_17 15736 16884 + GT4
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_18 16881 18026 + GT4
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_19 18065 19045 + GT2
pfam HRGMv2_0149_34 HRGMv2_0149_34_20 19042 20187 + PS_pyruv_trans
pfam HRGMv2_0149_34 HRGMv2_0149_34_21 20184 21272 + Glyco_hydro_88
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_22 21253 22164 + GT101
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_23 22152 23177 + GT2
NULL(UNKNOWN) HRGMv2_0149_34 HRGMv2_0149_34_24 23499 24935 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_25 24907 26184 + GT4
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_26 26198 26890 + GT32
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_27 26854 28026 + GT4
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_28 27981 28919 + GT2
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_29 28916 29950 + GT2
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_30 29947 31098 + GT4
CAZyme HRGMv2_0149_34 HRGMv2_0149_34_31 31095 32105 + GT2
Gene ID: HRGMv2_0149_34_15
Type: TC
Location: 13133 - 14407 (+)
Gene ID: HRGMv2_0149_34_16
Type: CAZyme
Location: 14832 - 15755 (+)
Gene ID: HRGMv2_0149_34_17
Type: CAZyme
Location: 15736 - 16884 (+)
Gene ID: HRGMv2_0149_34_18
Type: CAZyme
Location: 16881 - 18026 (+)
Gene ID: HRGMv2_0149_34_19
Type: CAZyme
Location: 18065 - 19045 (+)
Gene ID: HRGMv2_0149_34_20
Type: pfam
Location: 19042 - 20187 (+)
Gene ID: HRGMv2_0149_34_21
Type: pfam
Location: 20184 - 21272 (+)
Gene ID: HRGMv2_0149_34_22
Type: CAZyme
Location: 21253 - 22164 (+)
Gene ID: HRGMv2_0149_34_23
Type: CAZyme
Location: 22152 - 23177 (+)
Gene ID: HRGMv2_0149_34_24
Type:
Location: 23499 - 24935 (+)
Gene ID: HRGMv2_0149_34_25
Type: CAZyme
Location: 24907 - 26184 (+)
Gene ID: HRGMv2_0149_34_26
Type: CAZyme
Location: 26198 - 26890 (+)
Gene ID: HRGMv2_0149_34_27
Type: CAZyme
Location: 26854 - 28026 (+)
Gene ID: HRGMv2_0149_34_28
Type: CAZyme
Location: 27981 - 28919 (+)
Gene ID: HRGMv2_0149_34_29
Type: CAZyme
Location: 28916 - 29950 (+)
Gene ID: HRGMv2_0149_34_30
Type: CAZyme
Location: 29947 - 31098 (+)
Gene ID: HRGMv2_0149_34_31
Type: CAZyme
Location: 31095 - 32105 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0149_34_15 vegan > omnivore 4.80866 0.02833
HRGMv2_0149_34_16 vegan > omnivore 5.12889 0.02833
HRGMv2_0149_34_19 vegan > omnivore 4.57271 0.02642
HRGMv2_0149_34_24 vegan > omnivore 3.61071 0.02833
HRGMv2_0149_34_25 vegan > omnivore 3.61434 0.02833
HRGMv2_0149_34_26 vegan > omnivore 3.54860 0.02833
HRGMv2_0149_34_27 vegan > omnivore 3.62801 0.02833
HRGMv2_0149_34_28 vegan > omnivore 3.40046 0.02833
HRGMv2_0149_34_29 vegetarian > omnivore 2.20776 0.04166
HRGMv2_0149_34_29 vegan > omnivore 3.34195 0.02833
HRGMv2_0149_34_30 vegan > omnivore 3.30753 0.02833
HRGMv2_0149_34_31 vegan > omnivore 3.39878 0.02833

🧭 Explore Read Mapping of CGC

← Back to Cluster List