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Cluster: HRGMv2_0149_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0149_28 HRGMv2_0149_28_45 39216 40022 - 1.A.30.2.4
NULL(UNKNOWN) HRGMv2_0149_28 HRGMv2_0149_28_46 40167 40598 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0149_28 HRGMv2_0149_28_47 40820 42124 + 2.A.35.1.5
pfam HRGMv2_0149_28 HRGMv2_0149_28_48 42183 42488 + DUF4286
pfam HRGMv2_0149_28 HRGMv2_0149_28_49 42485 43054 + RuvC
CAZyme HRGMv2_0149_28 HRGMv2_0149_28_50 43091 45067 + GH13_14
TC HRGMv2_0149_28 HRGMv2_0149_28_51 45117 46568 + 3.A.1.131.2
Gene ID: HRGMv2_0149_28_45
Type: TC
Location: 39216 - 40022 (-)
Gene ID: HRGMv2_0149_28_46
Type:
Location: 40167 - 40598 (-)
Gene ID: HRGMv2_0149_28_47
Type: TC
Location: 40820 - 42124 (+)
Gene ID: HRGMv2_0149_28_48
Type: pfam
Location: 42183 - 42488 (+)
Gene ID: HRGMv2_0149_28_49
Type: pfam
Location: 42485 - 43054 (+)
Gene ID: HRGMv2_0149_28_50
Type: CAZyme
Location: 43091 - 45067 (+)
Gene ID: HRGMv2_0149_28_51
Type: TC
Location: 45117 - 46568 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0149_28_45 vegetarian > vegan 2.03727 0.03781
HRGMv2_0149_28_46 vegetarian > vegan 2.56371 0.03781
HRGMv2_0149_28_49 vegetarian > vegan 1.17121 0.01309

🧭 Explore Read Mapping of CGC

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