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Cluster: HRGMv2_0149_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0149_25 HRGMv2_0149_25_12 13775 15916 + 2.A.36.7.6
pfam HRGMv2_0149_25 HRGMv2_0149_25_13 15934 16236 - Acetyltransf_CG
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_14 16382 18394 - GH67
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_15 18387 19364 - GH43_1
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_16 19414 20562 - GH10
TC HRGMv2_0149_25 HRGMv2_0149_25_17 20577 22073 - 2.A.2.3.4
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_18 22083 23705 - CE20 | CE20
TF HRGMv2_0149_25 HRGMv2_0149_25_19 24054 28130 + HTH_AraC
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_20 28188 29078 - CE6
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_21 29101 31779 - GH31_4
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_22 31796 33199 - CBM6 | GH43_29
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_23 33229 34554 - CBM6 | GH43_29
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_24 34613 36001 - CBM6 | GH43_29
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_25 36017 37984 - GH97
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_26 38054 40444 - GH146
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_27 40482 42089 - CBM91 | GH43_10
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_28 42129 44579 - GH95
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_29 44601 45560 - CE1
CAZyme HRGMv2_0149_25 HRGMv2_0149_25_30 45822 47534 + CBM91 | GH43_12
Gene ID: HRGMv2_0149_25_12
Type: TC
Location: 13775 - 15916 (+)
Gene ID: HRGMv2_0149_25_13
Type: pfam
Location: 15934 - 16236 (-)
Gene ID: HRGMv2_0149_25_14
Type: CAZyme
Location: 16382 - 18394 (-)
Gene ID: HRGMv2_0149_25_15
Type: CAZyme
Location: 18387 - 19364 (-)
Gene ID: HRGMv2_0149_25_16
Type: CAZyme
Location: 19414 - 20562 (-)
Gene ID: HRGMv2_0149_25_17
Type: TC
Location: 20577 - 22073 (-)
Gene ID: HRGMv2_0149_25_18
Type: CAZyme
Location: 22083 - 23705 (-)
Gene ID: HRGMv2_0149_25_19
Type: TF
Location: 24054 - 28130 (+)
Gene ID: HRGMv2_0149_25_20
Type: CAZyme
Location: 28188 - 29078 (-)
Gene ID: HRGMv2_0149_25_21
Type: CAZyme
Location: 29101 - 31779 (-)
Gene ID: HRGMv2_0149_25_22
Type: CAZyme
Location: 31796 - 33199 (-)
Gene ID: HRGMv2_0149_25_23
Type: CAZyme
Location: 33229 - 34554 (-)
Gene ID: HRGMv2_0149_25_24
Type: CAZyme
Location: 34613 - 36001 (-)
Gene ID: HRGMv2_0149_25_25
Type: CAZyme
Location: 36017 - 37984 (-)
Gene ID: HRGMv2_0149_25_26
Type: CAZyme
Location: 38054 - 40444 (-)
Gene ID: HRGMv2_0149_25_27
Type: CAZyme
Location: 40482 - 42089 (-)
Gene ID: HRGMv2_0149_25_28
Type: CAZyme
Location: 42129 - 44579 (-)
Gene ID: HRGMv2_0149_25_29
Type: CAZyme
Location: 44601 - 45560 (-)
Gene ID: HRGMv2_0149_25_30
Type: CAZyme
Location: 45822 - 47534 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0149_25_12 vegetarian > vegan 1.06714 0.03781
HRGMv2_0149_25_20 vegetarian > vegan 2.01471 0.02986
HRGMv2_0149_25_21 vegetarian > vegan 1.30811 0.02848
HRGMv2_0149_25_24 vegetarian > vegan 1.80782 0.02743

🧭 Explore Read Mapping of CGC

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