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Cluster: HRGMv2_0149_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0149_23 HRGMv2_0149_23_13 14081 17332 + 1.B.14.6.1
TC HRGMv2_0149_23 HRGMv2_0149_23_14 17344 18909 + 8.A.46.1.2
pfam HRGMv2_0149_23 HRGMv2_0149_23_15 18930 19823 + GDPD | DUF4996
pfam HRGMv2_0149_23 HRGMv2_0149_23_16 19820 21046 + DUF218
CAZyme HRGMv2_0149_23 HRGMv2_0149_23_17 21081 23849 + GH92
NULL(UNKNOWN) HRGMv2_0149_23 HRGMv2_0149_23_18 23862 24107 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0149_23 HRGMv2_0149_23_19 24104 24658 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0149_23 HRGMv2_0149_23_20 25190 27502 + GH20
CAZyme HRGMv2_0149_23 HRGMv2_0149_23_21 27528 29525 + GH20
CAZyme HRGMv2_0149_23 HRGMv2_0149_23_22 29563 33120 + GH2
Gene ID: HRGMv2_0149_23_13
Type: TC
Location: 14081 - 17332 (+)
Gene ID: HRGMv2_0149_23_14
Type: TC
Location: 17344 - 18909 (+)
Gene ID: HRGMv2_0149_23_15
Type: pfam
Location: 18930 - 19823 (+)
Gene ID: HRGMv2_0149_23_16
Type: pfam
Location: 19820 - 21046 (+)
Gene ID: HRGMv2_0149_23_17
Type: CAZyme
Location: 21081 - 23849 (+)
Gene ID: HRGMv2_0149_23_18
Type:
Location: 23862 - 24107 (+)
Gene ID: HRGMv2_0149_23_19
Type:
Location: 24104 - 24658 (+)
Gene ID: HRGMv2_0149_23_20
Type: CAZyme
Location: 25190 - 27502 (+)
Gene ID: HRGMv2_0149_23_21
Type: CAZyme
Location: 27528 - 29525 (+)
Gene ID: HRGMv2_0149_23_22
Type: CAZyme
Location: 29563 - 33120 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0149_23_21 vegetarian > vegan 1.09268 0.03533

🧭 Explore Read Mapping of CGC

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