Cluster: HRGMv2_0149_CGC44
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0149
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0149_22 | HRGMv2_0149_22_25 | 29692 | 30297 | - | 3.A.8.1.1 |
| TC | HRGMv2_0149_22 | HRGMv2_0149_22_26 | 30576 | 34910 | + | 2.A.6.1.5 |
| pfam | HRGMv2_0149_22 | HRGMv2_0149_22_27 | 34931 | 35848 | + | HlyD_3 | HlyD_D23 |
| TC | HRGMv2_0149_22 | HRGMv2_0149_22_28 | 35858 | 36901 | + | 9.B.33.1.1 |
| TF | HRGMv2_0149_22 | HRGMv2_0149_22_29 | 36898 | 37656 | + | LytTR |
| TC | HRGMv2_0149_22 | HRGMv2_0149_22_30 | 37753 | 39372 | + | 3.A.1.121.4 |
| TC | HRGMv2_0149_22 | HRGMv2_0149_22_31 | 39582 | 40739 | + | 9.B.97.1.2 |
| NULL(UNKNOWN) | HRGMv2_0149_22 | HRGMv2_0149_22_32 | 40783 | 40884 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0149_22 | HRGMv2_0149_22_33 | 40844 | 42862 | - | GH97 |
| CAZyme | HRGMv2_0149_22 | HRGMv2_0149_22_34 | 42876 | 45272 | - | GH95 |
| TF | HRGMv2_0149_22 | HRGMv2_0149_22_35 | 45612 | 49610 | + | HTH_AraC |
| TC | HRGMv2_0149_22 | HRGMv2_0149_22_36 | 49835 | 52855 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0149_22 | HRGMv2_0149_22_37 | 52891 | 54561 | + | SusD_RagB | SusD-like_3 |
| sulfatase | HRGMv2_0149_22 | HRGMv2_0149_22_38 | 54574 | 55641 | + | S1_22 |
| CAZyme | HRGMv2_0149_22 | HRGMv2_0149_22_39 | 55651 | 58599 | + | CBM32 | GH2 |
| CAZyme | HRGMv2_0149_22 | HRGMv2_0149_22_40 | 58625 | 59482 | + | GH3 |
Gene ID: HRGMv2_0149_22_25
Type: TC
Location: 29692 - 30297 (-)
Type: TC
Location: 29692 - 30297 (-)
Gene ID: HRGMv2_0149_22_26
Type: TC
Location: 30576 - 34910 (+)
Type: TC
Location: 30576 - 34910 (+)
Gene ID: HRGMv2_0149_22_27
Type: pfam
Location: 34931 - 35848 (+)
Type: pfam
Location: 34931 - 35848 (+)
Gene ID: HRGMv2_0149_22_28
Type: TC
Location: 35858 - 36901 (+)
Type: TC
Location: 35858 - 36901 (+)
Gene ID: HRGMv2_0149_22_29
Type: TF
Location: 36898 - 37656 (+)
Type: TF
Location: 36898 - 37656 (+)
Gene ID: HRGMv2_0149_22_30
Type: TC
Location: 37753 - 39372 (+)
Type: TC
Location: 37753 - 39372 (+)
Gene ID: HRGMv2_0149_22_31
Type: TC
Location: 39582 - 40739 (+)
Type: TC
Location: 39582 - 40739 (+)
Gene ID: HRGMv2_0149_22_32
Type:
Location: 40783 - 40884 (+)
Type:
Location: 40783 - 40884 (+)
Gene ID: HRGMv2_0149_22_33
Type: CAZyme
Location: 40844 - 42862 (-)
Type: CAZyme
Location: 40844 - 42862 (-)
Gene ID: HRGMv2_0149_22_34
Type: CAZyme
Location: 42876 - 45272 (-)
Type: CAZyme
Location: 42876 - 45272 (-)
Gene ID: HRGMv2_0149_22_35
Type: TF
Location: 45612 - 49610 (+)
Type: TF
Location: 45612 - 49610 (+)
Gene ID: HRGMv2_0149_22_36
Type: TC
Location: 49835 - 52855 (+)
Type: TC
Location: 49835 - 52855 (+)
Gene ID: HRGMv2_0149_22_37
Type: pfam
Location: 52891 - 54561 (+)
Type: pfam
Location: 52891 - 54561 (+)
Gene ID: HRGMv2_0149_22_38
Type: sulfatase
Location: 54574 - 55641 (+)
Type: sulfatase
Location: 54574 - 55641 (+)
Gene ID: HRGMv2_0149_22_39
Type: CAZyme
Location: 55651 - 58599 (+)
Type: CAZyme
Location: 55651 - 58599 (+)
Gene ID: HRGMv2_0149_22_40
Type: CAZyme
Location: 58625 - 59482 (+)
Type: CAZyme
Location: 58625 - 59482 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0149_22_27 | vegetarian > vegan | 1.78915 | 0.03781 |
| HRGMv2_0149_22_29 | vegetarian > vegan | 1.25098 | 0.03781 |
| HRGMv2_0149_22_31 | vegetarian > vegan | 1.01534 | 0.03781 |