Cluster: HRGMv2_0149_CGC42
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0149
- CGC Family ID: CGCFAM_02864
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0149_18 | HRGMv2_0149_18_40 | 43300 | 44520 | - | GH88 |
| CAZyme | HRGMv2_0149_18 | HRGMv2_0149_18_41 | 44533 | 46185 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0149_18 | HRGMv2_0149_18_42 | 46333 | 48270 | - | GH97 |
| CAZyme | HRGMv2_0149_18 | HRGMv2_0149_18_43 | 48349 | 49839 | - | GH30_2 |
| CAZyme | HRGMv2_0149_18 | HRGMv2_0149_18_44 | 49857 | 52358 | - | CBM91 | GH43_19 | GH43_9 |
| pfam | HRGMv2_0149_18 | HRGMv2_0149_18_45 | 52684 | 53835 | - | Cyt_bd_oxida_II |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_46 | 53869 | 55365 | - | 3.D.4.3.2 |
| pfam | HRGMv2_0149_18 | HRGMv2_0149_18_47 | 55407 | 55625 | - | DUF4492 |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_48 | 55768 | 57111 | + | 3.A.1.109.5 |
| pfam | HRGMv2_0149_18 | HRGMv2_0149_18_49 | 57124 | 58347 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_50 | 58360 | 59106 | + | 3.A.1.122.2 |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_51 | 59130 | 60350 | + | 3.A.1.122.1 |
Gene ID: HRGMv2_0149_18_40
Type: CAZyme
Location: 43300 - 44520 (-)
Type: CAZyme
Location: 43300 - 44520 (-)
Gene ID: HRGMv2_0149_18_41
Type: CAZyme
Location: 44533 - 46185 (-)
Type: CAZyme
Location: 44533 - 46185 (-)
Gene ID: HRGMv2_0149_18_42
Type: CAZyme
Location: 46333 - 48270 (-)
Type: CAZyme
Location: 46333 - 48270 (-)
Gene ID: HRGMv2_0149_18_43
Type: CAZyme
Location: 48349 - 49839 (-)
Type: CAZyme
Location: 48349 - 49839 (-)
Gene ID: HRGMv2_0149_18_44
Type: CAZyme
Location: 49857 - 52358 (-)
Type: CAZyme
Location: 49857 - 52358 (-)
Gene ID: HRGMv2_0149_18_45
Type: pfam
Location: 52684 - 53835 (-)
Type: pfam
Location: 52684 - 53835 (-)
Gene ID: HRGMv2_0149_18_46
Type: TC
Location: 53869 - 55365 (-)
Type: TC
Location: 53869 - 55365 (-)
Gene ID: HRGMv2_0149_18_47
Type: pfam
Location: 55407 - 55625 (-)
Type: pfam
Location: 55407 - 55625 (-)
Gene ID: HRGMv2_0149_18_48
Type: TC
Location: 55768 - 57111 (+)
Type: TC
Location: 55768 - 57111 (+)
Gene ID: HRGMv2_0149_18_49
Type: pfam
Location: 57124 - 58347 (+)
Type: pfam
Location: 57124 - 58347 (+)
Gene ID: HRGMv2_0149_18_50
Type: TC
Location: 58360 - 59106 (+)
Type: TC
Location: 58360 - 59106 (+)
Gene ID: HRGMv2_0149_18_51
Type: TC
Location: 59130 - 60350 (+)
Type: TC
Location: 59130 - 60350 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.