Cluster: HRGMv2_0149_CGC41
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0149
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_6 | 4562 | 7180 | - | 1.B.14.6.14 |
| pfam | HRGMv2_0149_18 | HRGMv2_0149_18_7 | 7412 | 8719 | - | Inos-1-P_synth | NAD_binding_5 |
| STP | HRGMv2_0149_18 | HRGMv2_0149_18_8 | 8942 | 9889 | + | PfkB |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_9 | 9980 | 10750 | - | 3.A.1.7.2 |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_10 | 10738 | 11607 | - | 3.A.1.7.1 |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_11 | 11630 | 12487 | - | 3.A.1.7.1 |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_12 | 12503 | 13552 | - | 3.A.1.7.1 |
| NULL(UNKNOWN) | HRGMv2_0149_18 | HRGMv2_0149_18_13 | 13599 | 14666 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0149_18 | HRGMv2_0149_18_14 | 14839 | 16377 | - | GH51_1 |
| pfam | HRGMv2_0149_18 | HRGMv2_0149_18_15 | 16588 | 17613 | + | YceG |
| pfam | HRGMv2_0149_18 | HRGMv2_0149_18_16 | 17620 | 18309 | - | TrkA_N |
| TC | HRGMv2_0149_18 | HRGMv2_0149_18_17 | 18313 | 20142 | - | 2.A.38.4.3 |
Gene ID: HRGMv2_0149_18_6
Type: TC
Location: 4562 - 7180 (-)
Type: TC
Location: 4562 - 7180 (-)
Gene ID: HRGMv2_0149_18_7
Type: pfam
Location: 7412 - 8719 (-)
Type: pfam
Location: 7412 - 8719 (-)
Gene ID: HRGMv2_0149_18_8
Type: STP
Location: 8942 - 9889 (+)
Type: STP
Location: 8942 - 9889 (+)
Gene ID: HRGMv2_0149_18_9
Type: TC
Location: 9980 - 10750 (-)
Type: TC
Location: 9980 - 10750 (-)
Gene ID: HRGMv2_0149_18_10
Type: TC
Location: 10738 - 11607 (-)
Type: TC
Location: 10738 - 11607 (-)
Gene ID: HRGMv2_0149_18_11
Type: TC
Location: 11630 - 12487 (-)
Type: TC
Location: 11630 - 12487 (-)
Gene ID: HRGMv2_0149_18_12
Type: TC
Location: 12503 - 13552 (-)
Type: TC
Location: 12503 - 13552 (-)
Gene ID: HRGMv2_0149_18_13
Type:
Location: 13599 - 14666 (-)
Type:
Location: 13599 - 14666 (-)
Gene ID: HRGMv2_0149_18_14
Type: CAZyme
Location: 14839 - 16377 (-)
Type: CAZyme
Location: 14839 - 16377 (-)
Gene ID: HRGMv2_0149_18_15
Type: pfam
Location: 16588 - 17613 (+)
Type: pfam
Location: 16588 - 17613 (+)
Gene ID: HRGMv2_0149_18_16
Type: pfam
Location: 17620 - 18309 (-)
Type: pfam
Location: 17620 - 18309 (-)
Gene ID: HRGMv2_0149_18_17
Type: TC
Location: 18313 - 20142 (-)
Type: TC
Location: 18313 - 20142 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.