Cluster: HRGMv2_0149_CGC40
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0149
- CGC Family ID: CGCFAM_02953
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_13 | 10825 | 12975 | - | CE12 | GH105 |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_14 | 13006 | 14943 | - | PL11_1 |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_15 | 14959 | 16398 | - | GH28 |
| pfam | HRGMv2_0149_17 | HRGMv2_0149_17_16 | 16395 | 17018 | - | DUF4450 |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_17 | 17209 | 19281 | + | GH42 |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_18 | 19369 | 22626 | - | PL26 |
| pfam | HRGMv2_0149_17 | HRGMv2_0149_17_19 | 22777 | 24900 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0149_17 | HRGMv2_0149_17_20 | 24934 | 28098 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0149_17 | HRGMv2_0149_17_21 | 28380 | 28520 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_22 | 28716 | 31709 | + | GH2 |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_23 | 31783 | 34221 | - | GH2 |
| pfam | HRGMv2_0149_17 | HRGMv2_0149_17_24 | 34362 | 37196 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| TC | HRGMv2_0149_17 | HRGMv2_0149_17_25 | 37218 | 38162 | + | 2.A.115.1.2 |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_26 | 38280 | 40862 | + | GH2 |
| CAZyme | HRGMv2_0149_17 | HRGMv2_0149_17_27 | 40909 | 43218 | + | GH20 |
Gene ID: HRGMv2_0149_17_13
Type: CAZyme
Location: 10825 - 12975 (-)
Type: CAZyme
Location: 10825 - 12975 (-)
Gene ID: HRGMv2_0149_17_14
Type: CAZyme
Location: 13006 - 14943 (-)
Type: CAZyme
Location: 13006 - 14943 (-)
Gene ID: HRGMv2_0149_17_15
Type: CAZyme
Location: 14959 - 16398 (-)
Type: CAZyme
Location: 14959 - 16398 (-)
Gene ID: HRGMv2_0149_17_16
Type: pfam
Location: 16395 - 17018 (-)
Type: pfam
Location: 16395 - 17018 (-)
Gene ID: HRGMv2_0149_17_17
Type: CAZyme
Location: 17209 - 19281 (+)
Type: CAZyme
Location: 17209 - 19281 (+)
Gene ID: HRGMv2_0149_17_18
Type: CAZyme
Location: 19369 - 22626 (-)
Type: CAZyme
Location: 19369 - 22626 (-)
Gene ID: HRGMv2_0149_17_19
Type: pfam
Location: 22777 - 24900 (-)
Type: pfam
Location: 22777 - 24900 (-)
Gene ID: HRGMv2_0149_17_20
Type: TC
Location: 24934 - 28098 (-)
Type: TC
Location: 24934 - 28098 (-)
Gene ID: HRGMv2_0149_17_21
Type:
Location: 28380 - 28520 (+)
Type:
Location: 28380 - 28520 (+)
Gene ID: HRGMv2_0149_17_22
Type: CAZyme
Location: 28716 - 31709 (+)
Type: CAZyme
Location: 28716 - 31709 (+)
Gene ID: HRGMv2_0149_17_23
Type: CAZyme
Location: 31783 - 34221 (-)
Type: CAZyme
Location: 31783 - 34221 (-)
Gene ID: HRGMv2_0149_17_24
Type: pfam
Location: 34362 - 37196 (+)
Type: pfam
Location: 34362 - 37196 (+)
Gene ID: HRGMv2_0149_17_25
Type: TC
Location: 37218 - 38162 (+)
Type: TC
Location: 37218 - 38162 (+)
Gene ID: HRGMv2_0149_17_26
Type: CAZyme
Location: 38280 - 40862 (+)
Type: CAZyme
Location: 38280 - 40862 (+)
Gene ID: HRGMv2_0149_17_27
Type: CAZyme
Location: 40909 - 43218 (+)
Type: CAZyme
Location: 40909 - 43218 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.