Cluster: HRGMv2_0149_CGC4
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0149
- CGC Family ID: CGCFAM_01743
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0149_2 | HRGMv2_0149_2_37 | 46633 | 49872 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_38 | 50086 | 51399 | - | GH5_7 |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_39 | 51535 | 52503 | - | GH5_2 |
| TF | HRGMv2_0149_2 | HRGMv2_0149_2_40 | 52703 | 53593 | - | HTH_AraC |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_41 | 53785 | 55992 | + | GH36 |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_42 | 56077 | 57501 | - | CE20 |
| pfam | HRGMv2_0149_2 | HRGMv2_0149_2_43 | 57964 | 58737 | + | Shikimate_DH | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| NULL(UNKNOWN) | HRGMv2_0149_2 | HRGMv2_0149_2_44 | 58793 | 59020 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0149_2 | HRGMv2_0149_2_45 | 59024 | 60373 | - | 2.A.66.1.45 |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_46 | 60551 | 62719 | + | GH89 |
| pfam | HRGMv2_0149_2 | HRGMv2_0149_2_47 | 62748 | 63815 | + | HGSNAT_cat |
| TC | HRGMv2_0149_2 | HRGMv2_0149_2_48 | 63846 | 66836 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0149_2 | HRGMv2_0149_2_49 | 66857 | 68509 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_50 | 68632 | 70962 | + | GH92 |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_51 | 70984 | 72381 | + | GH28 |
Gene ID: HRGMv2_0149_2_37
Type: TC
Location: 46633 - 49872 (-)
Type: TC
Location: 46633 - 49872 (-)
Gene ID: HRGMv2_0149_2_38
Type: CAZyme
Location: 50086 - 51399 (-)
Type: CAZyme
Location: 50086 - 51399 (-)
Gene ID: HRGMv2_0149_2_39
Type: CAZyme
Location: 51535 - 52503 (-)
Type: CAZyme
Location: 51535 - 52503 (-)
Gene ID: HRGMv2_0149_2_40
Type: TF
Location: 52703 - 53593 (-)
Type: TF
Location: 52703 - 53593 (-)
Gene ID: HRGMv2_0149_2_41
Type: CAZyme
Location: 53785 - 55992 (+)
Type: CAZyme
Location: 53785 - 55992 (+)
Gene ID: HRGMv2_0149_2_42
Type: CAZyme
Location: 56077 - 57501 (-)
Type: CAZyme
Location: 56077 - 57501 (-)
Gene ID: HRGMv2_0149_2_43
Type: pfam
Location: 57964 - 58737 (+)
Type: pfam
Location: 57964 - 58737 (+)
Gene ID: HRGMv2_0149_2_44
Type:
Location: 58793 - 59020 (+)
Type:
Location: 58793 - 59020 (+)
Gene ID: HRGMv2_0149_2_45
Type: TC
Location: 59024 - 60373 (-)
Type: TC
Location: 59024 - 60373 (-)
Gene ID: HRGMv2_0149_2_46
Type: CAZyme
Location: 60551 - 62719 (+)
Type: CAZyme
Location: 60551 - 62719 (+)
Gene ID: HRGMv2_0149_2_47
Type: pfam
Location: 62748 - 63815 (+)
Type: pfam
Location: 62748 - 63815 (+)
Gene ID: HRGMv2_0149_2_48
Type: TC
Location: 63846 - 66836 (+)
Type: TC
Location: 63846 - 66836 (+)
Gene ID: HRGMv2_0149_2_49
Type: pfam
Location: 66857 - 68509 (+)
Type: pfam
Location: 66857 - 68509 (+)
Gene ID: HRGMv2_0149_2_50
Type: CAZyme
Location: 68632 - 70962 (+)
Type: CAZyme
Location: 68632 - 70962 (+)
Gene ID: HRGMv2_0149_2_51
Type: CAZyme
Location: 70984 - 72381 (+)
Type: CAZyme
Location: 70984 - 72381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0149_2_40 | vegetarian > vegan | 2.06534 | 0.03781 |
| HRGMv2_0149_2_47 | vegetarian > vegan | 3.17599 | 0.03781 |