Cluster: HRGMv2_0149_CGC37
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: arabinogalactan
- Genome ID: HRGMv2_0149
- CGC Family ID: CGCFAM_00225
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0149_14 | HRGMv2_0149_14_38 | 47349 | 50072 | + | GH97 |
| CAZyme | HRGMv2_0149_14 | HRGMv2_0149_14_39 | 50089 | 52503 | + | CBM32 | GH43_34 |
| CAZyme | HRGMv2_0149_14 | HRGMv2_0149_14_40 | 52522 | 54942 | + | GH127 |
| peptidase | HRGMv2_0149_14 | HRGMv2_0149_14_41 | 55049 | 57313 | + | S09.UPB |
| peptidase | HRGMv2_0149_14 | HRGMv2_0149_14_42 | 57333 | 58598 | - | S09.UPB |
| TC | HRGMv2_0149_14 | HRGMv2_0149_14_43 | 58707 | 59708 | + | 8.A.5.1.3 |
| TC | HRGMv2_0149_14 | HRGMv2_0149_14_44 | 59857 | 61158 | + | 9.A.40.1.2 |
| TF | HRGMv2_0149_14 | HRGMv2_0149_14_45 | 61457 | 65482 | + | HTH_AraC |
| pfam | HRGMv2_0149_14 | HRGMv2_0149_14_46 | 65515 | 67335 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0149_14 | HRGMv2_0149_14_47 | 67369 | 70587 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0149_14 | HRGMv2_0149_14_48 | 70939 | 72843 | + | PL33_1 |
| CAZyme | HRGMv2_0149_14 | HRGMv2_0149_14_49 | 72870 | 74114 | + | GH88 |
| CAZyme | HRGMv2_0149_14 | HRGMv2_0149_14_50 | 74121 | 75356 | + | GH154 |
Gene ID: HRGMv2_0149_14_38
Type: CAZyme
Location: 47349 - 50072 (+)
Type: CAZyme
Location: 47349 - 50072 (+)
Gene ID: HRGMv2_0149_14_39
Type: CAZyme
Location: 50089 - 52503 (+)
Type: CAZyme
Location: 50089 - 52503 (+)
Gene ID: HRGMv2_0149_14_40
Type: CAZyme
Location: 52522 - 54942 (+)
Type: CAZyme
Location: 52522 - 54942 (+)
Gene ID: HRGMv2_0149_14_41
Type: peptidase
Location: 55049 - 57313 (+)
Type: peptidase
Location: 55049 - 57313 (+)
Gene ID: HRGMv2_0149_14_42
Type: peptidase
Location: 57333 - 58598 (-)
Type: peptidase
Location: 57333 - 58598 (-)
Gene ID: HRGMv2_0149_14_43
Type: TC
Location: 58707 - 59708 (+)
Type: TC
Location: 58707 - 59708 (+)
Gene ID: HRGMv2_0149_14_44
Type: TC
Location: 59857 - 61158 (+)
Type: TC
Location: 59857 - 61158 (+)
Gene ID: HRGMv2_0149_14_45
Type: TF
Location: 61457 - 65482 (+)
Type: TF
Location: 61457 - 65482 (+)
Gene ID: HRGMv2_0149_14_46
Type: pfam
Location: 65515 - 67335 (-)
Type: pfam
Location: 65515 - 67335 (-)
Gene ID: HRGMv2_0149_14_47
Type: TC
Location: 67369 - 70587 (-)
Type: TC
Location: 67369 - 70587 (-)
Gene ID: HRGMv2_0149_14_48
Type: CAZyme
Location: 70939 - 72843 (+)
Type: CAZyme
Location: 70939 - 72843 (+)
Gene ID: HRGMv2_0149_14_49
Type: CAZyme
Location: 72870 - 74114 (+)
Type: CAZyme
Location: 72870 - 74114 (+)
Gene ID: HRGMv2_0149_14_50
Type: CAZyme
Location: 74121 - 75356 (+)
Type: CAZyme
Location: 74121 - 75356 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0149_14_45 | vegetarian > vegan | 1.60320 | 0.03781 |
| HRGMv2_0149_14_47 | vegetarian > vegan | 1.00743 | 0.03781 |
| HRGMv2_0149_14_48 | vegetarian > vegan | 1.38662 | 0.03781 |
| HRGMv2_0149_14_50 | vegetarian > vegan | 1.62732 | 0.03781 |