dbCAN Logo

Cluster: HRGMv2_0149_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0149_8 HRGMv2_0149_8_42 46956 48233 + PL42
CAZyme HRGMv2_0149_8 HRGMv2_0149_8_43 48249 50558 + GH105 | GH154
CAZyme HRGMv2_0149_8 HRGMv2_0149_8_44 50687 51679 + GH43_17
CAZyme HRGMv2_0149_8 HRGMv2_0149_8_45 51720 52871 + GH43_24
TF HRGMv2_0149_8 HRGMv2_0149_8_46 52941 56969 - HTH_AraC
TC HRGMv2_0149_8 HRGMv2_0149_8_47 57417 60719 + 1.B.14.6.1
pfam HRGMv2_0149_8 HRGMv2_0149_8_48 60735 62762 + SusD_RagB | SusD-like_3
pfam HRGMv2_0149_8 HRGMv2_0149_8_49 63152 64162 - Semialdhyde_dh | Semialdhyde_dhC
TC HRGMv2_0149_8 HRGMv2_0149_8_50 64352 66496 + 2.A.37.2.5
pfam HRGMv2_0149_8 HRGMv2_0149_8_51 66493 67218 + ThiF
TC HRGMv2_0149_8 HRGMv2_0149_8_52 67225 67875 + 3.A.1.125.1
Gene ID: HRGMv2_0149_8_42
Type: CAZyme
Location: 46956 - 48233 (+)
Gene ID: HRGMv2_0149_8_43
Type: CAZyme
Location: 48249 - 50558 (+)
Gene ID: HRGMv2_0149_8_44
Type: CAZyme
Location: 50687 - 51679 (+)
Gene ID: HRGMv2_0149_8_45
Type: CAZyme
Location: 51720 - 52871 (+)
Gene ID: HRGMv2_0149_8_46
Type: TF
Location: 52941 - 56969 (-)
Gene ID: HRGMv2_0149_8_47
Type: TC
Location: 57417 - 60719 (+)
Gene ID: HRGMv2_0149_8_48
Type: pfam
Location: 60735 - 62762 (+)
Gene ID: HRGMv2_0149_8_49
Type: pfam
Location: 63152 - 64162 (-)
Gene ID: HRGMv2_0149_8_50
Type: TC
Location: 64352 - 66496 (+)
Gene ID: HRGMv2_0149_8_51
Type: pfam
Location: 66493 - 67218 (+)
Gene ID: HRGMv2_0149_8_52
Type: TC
Location: 67225 - 67875 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0149_8_47 vegan > omnivore 1.38583 0.02833
HRGMv2_0149_8_48 vegan > omnivore 1.03107 0.02833

🧭 Explore Read Mapping of CGC

← Back to Cluster List