Cluster: HRGMv2_0149_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0149
- CGC Family ID: CGCFAM_02862
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0149_2 | HRGMv2_0149_2_9 | 10090 | 10806 | - | 1.A.30.2.9 |
| pfam | HRGMv2_0149_2 | HRGMv2_0149_2_10 | 10813 | 11526 | - | PdxJ |
| pfam | HRGMv2_0149_2 | HRGMv2_0149_2_11 | 11634 | 12518 | + | NAD_kinase | NAD_kinase_C |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_12 | 12601 | 15669 | - | PL8_2 |
| TC | HRGMv2_0149_2 | HRGMv2_0149_2_13 | 15726 | 17381 | - | 2.A.1.42.2 |
| TF | HRGMv2_0149_2 | HRGMv2_0149_2_14 | 17403 | 17957 | - | HTH_3 |
| NULL(UNKNOWN) | HRGMv2_0149_2 | HRGMv2_0149_2_15 | 18051 | 18440 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0149_2 | HRGMv2_0149_2_16 | 18474 | 19610 | + | GH109 |
| pfam | HRGMv2_0149_2 | HRGMv2_0149_2_17 | 19622 | 20713 | - | AA_kinase | PUA |
| pfam | HRGMv2_0149_2 | HRGMv2_0149_2_18 | 21156 | 21938 | + | S6PP | Hydrolase_3 |
| TC | HRGMv2_0149_2 | HRGMv2_0149_2_19 | 22117 | 24540 | + | 1.B.14.3.1 |
Gene ID: HRGMv2_0149_2_9
Type: TC
Location: 10090 - 10806 (-)
Type: TC
Location: 10090 - 10806 (-)
Gene ID: HRGMv2_0149_2_10
Type: pfam
Location: 10813 - 11526 (-)
Type: pfam
Location: 10813 - 11526 (-)
Gene ID: HRGMv2_0149_2_11
Type: pfam
Location: 11634 - 12518 (+)
Type: pfam
Location: 11634 - 12518 (+)
Gene ID: HRGMv2_0149_2_12
Type: CAZyme
Location: 12601 - 15669 (-)
Type: CAZyme
Location: 12601 - 15669 (-)
Gene ID: HRGMv2_0149_2_13
Type: TC
Location: 15726 - 17381 (-)
Type: TC
Location: 15726 - 17381 (-)
Gene ID: HRGMv2_0149_2_14
Type: TF
Location: 17403 - 17957 (-)
Type: TF
Location: 17403 - 17957 (-)
Gene ID: HRGMv2_0149_2_15
Type:
Location: 18051 - 18440 (+)
Type:
Location: 18051 - 18440 (+)
Gene ID: HRGMv2_0149_2_16
Type: CAZyme
Location: 18474 - 19610 (+)
Type: CAZyme
Location: 18474 - 19610 (+)
Gene ID: HRGMv2_0149_2_17
Type: pfam
Location: 19622 - 20713 (-)
Type: pfam
Location: 19622 - 20713 (-)
Gene ID: HRGMv2_0149_2_18
Type: pfam
Location: 21156 - 21938 (+)
Type: pfam
Location: 21156 - 21938 (+)
Gene ID: HRGMv2_0149_2_19
Type: TC
Location: 22117 - 24540 (+)
Type: TC
Location: 22117 - 24540 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.