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Cluster: HRGMv2_0149_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0149_6 HRGMv2_0149_6_10 8935 9996 - 3.A.1.105.4
TC HRGMv2_0149_6 HRGMv2_0149_6_11 10009 11130 - 3.A.1.105.4
TC HRGMv2_0149_6 HRGMv2_0149_6_12 11127 12617 - 3.A.1.105.15
TC HRGMv2_0149_6 HRGMv2_0149_6_13 12633 13523 - 3.A.1.105.4
pfam HRGMv2_0149_6 HRGMv2_0149_6_14 13552 14808 - OEP | OEP
TF HRGMv2_0149_6 HRGMv2_0149_6_15 14966 15874 + HTH_AraC
TC HRGMv2_0149_6 HRGMv2_0149_6_16 15887 17254 - 2.A.66.1.32
pfam HRGMv2_0149_6 HRGMv2_0149_6_17 17377 19995 - tRNA-synt_2c | DHHA1 | tRNA_SAD
TC HRGMv2_0149_6 HRGMv2_0149_6_18 20129 21094 + 1.A.34.1.3
TF HRGMv2_0149_6 HRGMv2_0149_6_19 21110 21457 + MerR
CAZyme HRGMv2_0149_6 HRGMv2_0149_6_20 21562 24225 - GH2
sulfatase HRGMv2_0149_6 HRGMv2_0149_6_21 24247 25815 - S1_4
pfam HRGMv2_0149_6 HRGMv2_0149_6_22 25895 27451 - SusD_RagB | SusD-like_3
TC HRGMv2_0149_6 HRGMv2_0149_6_23 27464 30535 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0149_6 HRGMv2_0149_6_24 30610 30702 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_0149_6 HRGMv2_0149_6_25 30704 31351 - HhH-GPD
TC HRGMv2_0149_6 HRGMv2_0149_6_26 31386 32426 - 1.A.35.3.2
Gene ID: HRGMv2_0149_6_10
Type: TC
Location: 8935 - 9996 (-)
Gene ID: HRGMv2_0149_6_11
Type: TC
Location: 10009 - 11130 (-)
Gene ID: HRGMv2_0149_6_12
Type: TC
Location: 11127 - 12617 (-)
Gene ID: HRGMv2_0149_6_13
Type: TC
Location: 12633 - 13523 (-)
Gene ID: HRGMv2_0149_6_14
Type: pfam
Location: 13552 - 14808 (-)
Gene ID: HRGMv2_0149_6_15
Type: TF
Location: 14966 - 15874 (+)
Gene ID: HRGMv2_0149_6_16
Type: TC
Location: 15887 - 17254 (-)
Gene ID: HRGMv2_0149_6_17
Type: pfam
Location: 17377 - 19995 (-)
Gene ID: HRGMv2_0149_6_18
Type: TC
Location: 20129 - 21094 (+)
Gene ID: HRGMv2_0149_6_19
Type: TF
Location: 21110 - 21457 (+)
Gene ID: HRGMv2_0149_6_20
Type: CAZyme
Location: 21562 - 24225 (-)
Gene ID: HRGMv2_0149_6_21
Type: sulfatase
Location: 24247 - 25815 (-)
Gene ID: HRGMv2_0149_6_22
Type: pfam
Location: 25895 - 27451 (-)
Gene ID: HRGMv2_0149_6_23
Type: TC
Location: 27464 - 30535 (-)
Gene ID: HRGMv2_0149_6_24
Type:
Location: 30610 - 30702 (+)
Gene ID: HRGMv2_0149_6_25
Type: STP
Location: 30704 - 31351 (-)
Gene ID: HRGMv2_0149_6_26
Type: TC
Location: 31386 - 32426 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0149_6_10 vegetarian > vegan 1.41660 0.02316

🧭 Explore Read Mapping of CGC

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