Cluster: HRGMv2_0148_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0148
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0148_77 | HRGMv2_0148_77_71 | 79465 | 80895 | + | 2.A.114.1.4 |
| NULL(UNKNOWN) | HRGMv2_0148_77 | HRGMv2_0148_77_72 | 80996 | 82204 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0148_77 | HRGMv2_0148_77_73 | 82269 | 83696 | - | GH28 |
| CAZyme | HRGMv2_0148_77 | HRGMv2_0148_77_74 | 83880 | 85163 | + | CE12 |
| CAZyme | HRGMv2_0148_77 | HRGMv2_0148_77_75 | 85395 | 87026 | + | CE12 | CE12 |
Gene ID: HRGMv2_0148_77_71
Type: TC
Location: 79465 - 80895 (+)
Type: TC
Location: 79465 - 80895 (+)
Gene ID: HRGMv2_0148_77_72
Type:
Location: 80996 - 82204 (+)
Type:
Location: 80996 - 82204 (+)
Gene ID: HRGMv2_0148_77_73
Type: CAZyme
Location: 82269 - 83696 (-)
Type: CAZyme
Location: 82269 - 83696 (-)
Gene ID: HRGMv2_0148_77_74
Type: CAZyme
Location: 83880 - 85163 (+)
Type: CAZyme
Location: 83880 - 85163 (+)
Gene ID: HRGMv2_0148_77_75
Type: CAZyme
Location: 85395 - 87026 (+)
Type: CAZyme
Location: 85395 - 87026 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.