Cluster: HRGMv2_0140_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_10 | HRGMv2_0140_10_1 | 1 | 1317 | + | GH97 |
| TC | HRGMv2_0140_10 | HRGMv2_0140_10_2 | 1433 | 2701 | - | 2.A.55.2.6 |
| TC | HRGMv2_0140_10 | HRGMv2_0140_10_3 | 2706 | 4037 | - | 2.A.40.4.2 |
Gene ID: HRGMv2_0140_10_1
Type: CAZyme
Location: 1 - 1317 (+)
Type: CAZyme
Location: 1 - 1317 (+)
Gene ID: HRGMv2_0140_10_2
Type: TC
Location: 1433 - 2701 (-)
Type: TC
Location: 1433 - 2701 (-)
Gene ID: HRGMv2_0140_10_3
Type: TC
Location: 2706 - 4037 (-)
Type: TC
Location: 2706 - 4037 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_10_1 | vegetarian > omnivore | 1.08998 | 0.00180 |