Cluster: HRGMv2_0140_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_9 | HRGMv2_0140_9_8 | 9756 | 11135 | + | CE15 |
| TC | HRGMv2_0140_9 | HRGMv2_0140_9_9 | 11166 | 12116 | - | 2.A.7.3.57 |
| TC | HRGMv2_0140_9 | HRGMv2_0140_9_10 | 12339 | 14336 | + | 2.A.67.4.2 |
| peptidase | HRGMv2_0140_9 | HRGMv2_0140_9_11 | 14397 | 15635 | + | M20.003 |
| pfam | HRGMv2_0140_9 | HRGMv2_0140_9_12 | 15731 | 16264 | - | ThrE_2 |
| TC | HRGMv2_0140_9 | HRGMv2_0140_9_13 | 16261 | 17202 | - | 2.A.79.1.4 |
| pfam | HRGMv2_0140_9 | HRGMv2_0140_9_14 | 17481 | 17909 | + | HSP20 | ArsA_HSP20 |
| pfam | HRGMv2_0140_9 | HRGMv2_0140_9_15 | 18372 | 18863 | - | tRNA_edit |
| CAZyme | HRGMv2_0140_9 | HRGMv2_0140_9_16 | 19229 | 21121 | + | GH127 |
Gene ID: HRGMv2_0140_9_8
Type: CAZyme
Location: 9756 - 11135 (+)
Type: CAZyme
Location: 9756 - 11135 (+)
Gene ID: HRGMv2_0140_9_9
Type: TC
Location: 11166 - 12116 (-)
Type: TC
Location: 11166 - 12116 (-)
Gene ID: HRGMv2_0140_9_10
Type: TC
Location: 12339 - 14336 (+)
Type: TC
Location: 12339 - 14336 (+)
Gene ID: HRGMv2_0140_9_11
Type: peptidase
Location: 14397 - 15635 (+)
Type: peptidase
Location: 14397 - 15635 (+)
Gene ID: HRGMv2_0140_9_12
Type: pfam
Location: 15731 - 16264 (-)
Type: pfam
Location: 15731 - 16264 (-)
Gene ID: HRGMv2_0140_9_13
Type: TC
Location: 16261 - 17202 (-)
Type: TC
Location: 16261 - 17202 (-)
Gene ID: HRGMv2_0140_9_14
Type: pfam
Location: 17481 - 17909 (+)
Type: pfam
Location: 17481 - 17909 (+)
Gene ID: HRGMv2_0140_9_15
Type: pfam
Location: 18372 - 18863 (-)
Type: pfam
Location: 18372 - 18863 (-)
Gene ID: HRGMv2_0140_9_16
Type: CAZyme
Location: 19229 - 21121 (+)
Type: CAZyme
Location: 19229 - 21121 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_9_8 | vegetarian > omnivore | 1.20842 | 0.00180 |
| HRGMv2_0140_9_11 | vegetarian > omnivore | 1.17322 | 0.00180 |
| HRGMv2_0140_9_13 | vegetarian > omnivore | 1.11233 | 0.00180 |
| HRGMv2_0140_9_14 | vegan > omnivore | 1.36686 | 0.01548 |
| HRGMv2_0140_9_14 | vegetarian > omnivore | 2.02150 | 0.00180 |
| HRGMv2_0140_9_16 | vegetarian > omnivore | 1.39592 | 0.00180 |