Cluster: HRGMv2_0140_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_8 | HRGMv2_0140_8_20 | 17175 | 18461 | + | GH177 |
| TF | HRGMv2_0140_8 | HRGMv2_0140_8_21 | 18469 | 19647 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_0140_8 | HRGMv2_0140_8_22 | 19766 | 20476 | + | 1.A.30.3.2 |
| pfam | HRGMv2_0140_8 | HRGMv2_0140_8_23 | 20481 | 20900 | + | ExbD |
| TC | HRGMv2_0140_8 | HRGMv2_0140_8_24 | 21071 | 22792 | + | 3.A.1.135.5 |
Gene ID: HRGMv2_0140_8_20
Type: CAZyme
Location: 17175 - 18461 (+)
Type: CAZyme
Location: 17175 - 18461 (+)
Gene ID: HRGMv2_0140_8_21
Type: TF
Location: 18469 - 19647 (+)
Type: TF
Location: 18469 - 19647 (+)
Gene ID: HRGMv2_0140_8_22
Type: TC
Location: 19766 - 20476 (+)
Type: TC
Location: 19766 - 20476 (+)
Gene ID: HRGMv2_0140_8_23
Type: pfam
Location: 20481 - 20900 (+)
Type: pfam
Location: 20481 - 20900 (+)
Gene ID: HRGMv2_0140_8_24
Type: TC
Location: 21071 - 22792 (+)
Type: TC
Location: 21071 - 22792 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_8_20 | vegetarian > omnivore | 1.38019 | 0.00180 |
| HRGMv2_0140_8_20 | vegetarian > vegan | 1.26841 | 0.01226 |
| HRGMv2_0140_8_21 | vegetarian > omnivore | 1.32777 | 0.00180 |
| HRGMv2_0140_8_22 | vegetarian > omnivore | 1.22787 | 0.00180 |