Cluster: HRGMv2_0140_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_8 | HRGMv2_0140_8_12 | 8265 | 9605 | + | GH177 |
| TC | HRGMv2_0140_8 | HRGMv2_0140_8_13 | 9714 | 11051 | + | 2.A.1.7.9 |
| CAZyme | HRGMv2_0140_8 | HRGMv2_0140_8_14 | 11065 | 12252 | + | CE9 |
Gene ID: HRGMv2_0140_8_12
Type: CAZyme
Location: 8265 - 9605 (+)
Type: CAZyme
Location: 8265 - 9605 (+)
Gene ID: HRGMv2_0140_8_13
Type: TC
Location: 9714 - 11051 (+)
Type: TC
Location: 9714 - 11051 (+)
Gene ID: HRGMv2_0140_8_14
Type: CAZyme
Location: 11065 - 12252 (+)
Type: CAZyme
Location: 11065 - 12252 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_8_12 | vegetarian > omnivore | 1.11150 | 0.00180 |
| HRGMv2_0140_8_13 | vegan > omnivore | 1.10950 | 0.01548 |
| HRGMv2_0140_8_13 | vegetarian > omnivore | 1.30502 | 0.00180 |
| HRGMv2_0140_8_14 | vegetarian > omnivore | 1.45189 | 0.00180 |