Cluster: HRGMv2_0140_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_4 | HRGMv2_0140_4_22 | 23613 | 24998 | - | GH177 |
| TC | HRGMv2_0140_4 | HRGMv2_0140_4_23 | 25136 | 26698 | - | 9.A.25.1.1 |
| CAZyme | HRGMv2_0140_4 | HRGMv2_0140_4_24 | 26995 | 29334 | - | GH92 |
Gene ID: HRGMv2_0140_4_22
Type: CAZyme
Location: 23613 - 24998 (-)
Type: CAZyme
Location: 23613 - 24998 (-)
Gene ID: HRGMv2_0140_4_23
Type: TC
Location: 25136 - 26698 (-)
Type: TC
Location: 25136 - 26698 (-)
Gene ID: HRGMv2_0140_4_24
Type: CAZyme
Location: 26995 - 29334 (-)
Type: CAZyme
Location: 26995 - 29334 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_4_22 | vegetarian > omnivore | 1.15243 | 0.00180 |
| HRGMv2_0140_4_23 | vegetarian > omnivore | 1.03111 | 0.00180 |