Cluster: HRGMv2_0140_CGC27
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_65 | HRGMv2_0140_65_2 | 791 | 2338 | + | GH29 |
| pfam | HRGMv2_0140_65 | HRGMv2_0140_65_3 | 2581 | 4251 | + | PRK |
| TC | HRGMv2_0140_65 | HRGMv2_0140_65_4 | 4710 | 5537 | + | 3.A.1.132.4 |
Gene ID: HRGMv2_0140_65_2
Type: CAZyme
Location: 791 - 2338 (+)
Type: CAZyme
Location: 791 - 2338 (+)
Gene ID: HRGMv2_0140_65_3
Type: pfam
Location: 2581 - 4251 (+)
Type: pfam
Location: 2581 - 4251 (+)
Gene ID: HRGMv2_0140_65_4
Type: TC
Location: 4710 - 5537 (+)
Type: TC
Location: 4710 - 5537 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_65_2 | vegetarian > omnivore | 1.36135 | 0.00180 |
| HRGMv2_0140_65_3 | vegetarian > omnivore | 1.56701 | 0.00180 |