Cluster: HRGMv2_0140_CGC26
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_64 | HRGMv2_0140_64_8 | 10646 | 12778 | + | 3.A.12.1.1 |
| pfam | HRGMv2_0140_64 | HRGMv2_0140_64_9 | 12790 | 13440 | + | LolA_2 |
| pfam | HRGMv2_0140_64 | HRGMv2_0140_64_10 | 13635 | 14093 | - | DUF4293 |
| CAZyme | HRGMv2_0140_64 | HRGMv2_0140_64_11 | 14143 | 15294 | - | GT2 |
Gene ID: HRGMv2_0140_64_8
Type: TC
Location: 10646 - 12778 (+)
Type: TC
Location: 10646 - 12778 (+)
Gene ID: HRGMv2_0140_64_9
Type: pfam
Location: 12790 - 13440 (+)
Type: pfam
Location: 12790 - 13440 (+)
Gene ID: HRGMv2_0140_64_10
Type: pfam
Location: 13635 - 14093 (-)
Type: pfam
Location: 13635 - 14093 (-)
Gene ID: HRGMv2_0140_64_11
Type: CAZyme
Location: 14143 - 15294 (-)
Type: CAZyme
Location: 14143 - 15294 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_64_9 | vegetarian > omnivore | 1.61295 | 0.00180 |
| HRGMv2_0140_64_9 | vegetarian > vegan | 1.21913 | 0.01226 |
| HRGMv2_0140_64_10 | vegetarian > omnivore | 1.95934 | 0.00180 |
| HRGMv2_0140_64_10 | vegetarian > vegan | 1.09659 | 0.01226 |
| HRGMv2_0140_64_11 | vegetarian > vegan | 1.30909 | 0.00110 |