Cluster: HRGMv2_0140_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_58 | HRGMv2_0140_58_8 | 5822 | 7816 | + | 3.A.1.120.6 |
| CAZyme | HRGMv2_0140_58 | HRGMv2_0140_58_9 | 8161 | 9999 | - | GH97 |
| TC | HRGMv2_0140_58 | HRGMv2_0140_58_10 | 10032 | 11132 | - | 2.A.86.1.8 |
| pfam | HRGMv2_0140_58 | HRGMv2_0140_58_11 | 11202 | 11852 | - | PS_Dcarbxylase |
| pfam | HRGMv2_0140_58 | HRGMv2_0140_58_12 | 11884 | 12666 | - | CTP_transf_1 |
| TC | HRGMv2_0140_58 | HRGMv2_0140_58_13 | 12721 | 14682 | - | 3.A.16.1.1 |
Gene ID: HRGMv2_0140_58_8
Type: TC
Location: 5822 - 7816 (+)
Type: TC
Location: 5822 - 7816 (+)
Gene ID: HRGMv2_0140_58_9
Type: CAZyme
Location: 8161 - 9999 (-)
Type: CAZyme
Location: 8161 - 9999 (-)
Gene ID: HRGMv2_0140_58_10
Type: TC
Location: 10032 - 11132 (-)
Type: TC
Location: 10032 - 11132 (-)
Gene ID: HRGMv2_0140_58_11
Type: pfam
Location: 11202 - 11852 (-)
Type: pfam
Location: 11202 - 11852 (-)
Gene ID: HRGMv2_0140_58_12
Type: pfam
Location: 11884 - 12666 (-)
Type: pfam
Location: 11884 - 12666 (-)
Gene ID: HRGMv2_0140_58_13
Type: TC
Location: 12721 - 14682 (-)
Type: TC
Location: 12721 - 14682 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_58_9 | vegetarian > omnivore | 1.44433 | 0.00180 |
| HRGMv2_0140_58_10 | vegetarian > omnivore | 1.62482 | 0.00180 |
| HRGMv2_0140_58_10 | vegetarian > vegan | 1.17602 | 0.01226 |
| HRGMv2_0140_58_11 | vegan > omnivore | 1.25454 | 0.01548 |
| HRGMv2_0140_58_11 | vegetarian > omnivore | 1.49321 | 0.00180 |
| HRGMv2_0140_58_12 | vegetarian > omnivore | 1.41603 | 0.00180 |