Cluster: HRGMv2_0140_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_43 | HRGMv2_0140_43_6 | 5358 | 8753 | - | GH106 |
| STP | HRGMv2_0140_43 | HRGMv2_0140_43_7 | 8953 | 9888 | + | HATPase_c |
| TF | HRGMv2_0140_43 | HRGMv2_0140_43_8 | 9936 | 10568 | + | GerE |
| TC | HRGMv2_0140_43 | HRGMv2_0140_43_9 | 10713 | 12299 | - | 1.B.9.4.3 |
Gene ID: HRGMv2_0140_43_6
Type: CAZyme
Location: 5358 - 8753 (-)
Type: CAZyme
Location: 5358 - 8753 (-)
Gene ID: HRGMv2_0140_43_7
Type: STP
Location: 8953 - 9888 (+)
Type: STP
Location: 8953 - 9888 (+)
Gene ID: HRGMv2_0140_43_8
Type: TF
Location: 9936 - 10568 (+)
Type: TF
Location: 9936 - 10568 (+)
Gene ID: HRGMv2_0140_43_9
Type: TC
Location: 10713 - 12299 (-)
Type: TC
Location: 10713 - 12299 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_43_6 | vegetarian > omnivore | 1.49819 | 0.00180 |
| HRGMv2_0140_43_7 | vegetarian > omnivore | 1.16715 | 0.00180 |
| HRGMv2_0140_43_8 | vegetarian > omnivore | 1.15857 | 0.00180 |
| HRGMv2_0140_43_9 | vegan > omnivore | 1.24126 | 0.01548 |
| HRGMv2_0140_43_9 | vegetarian > omnivore | 1.37513 | 0.00180 |