Cluster: HRGMv2_0140_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_31 | HRGMv2_0140_31_7 | 8911 | 10095 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0140_31 | HRGMv2_0140_31_8 | 10244 | 11374 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0140_31 | HRGMv2_0140_31_9 | 11396 | 12478 | - | Acyl_transf_3 |
| TC | HRGMv2_0140_31 | HRGMv2_0140_31_10 | 12483 | 14015 | - | 2.A.66.2.23 |
| CAZyme | HRGMv2_0140_31 | HRGMv2_0140_31_11 | 14012 | 14932 | - | GT2 |
Gene ID: HRGMv2_0140_31_7
Type: CAZyme
Location: 8911 - 10095 (-)
Type: CAZyme
Location: 8911 - 10095 (-)
Gene ID: HRGMv2_0140_31_8
Type:
Location: 10244 - 11374 (-)
Type:
Location: 10244 - 11374 (-)
Gene ID: HRGMv2_0140_31_9
Type: pfam
Location: 11396 - 12478 (-)
Type: pfam
Location: 11396 - 12478 (-)
Gene ID: HRGMv2_0140_31_10
Type: TC
Location: 12483 - 14015 (-)
Type: TC
Location: 12483 - 14015 (-)
Gene ID: HRGMv2_0140_31_11
Type: CAZyme
Location: 14012 - 14932 (-)
Type: CAZyme
Location: 14012 - 14932 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_31_8 | vegan > omnivore | 1.41032 | 0.01548 |
| HRGMv2_0140_31_8 | vegetarian > omnivore | 2.17188 | 0.00180 |
| HRGMv2_0140_31_9 | vegetarian > omnivore | 1.34672 | 0.00180 |