Cluster: HRGMv2_0140_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_28 | HRGMv2_0140_28_22 | 26069 | 26923 | - | 2.A.64.3.2 |
| pfam | HRGMv2_0140_28 | HRGMv2_0140_28_23 | 26952 | 27203 | - | TatA_B_E |
| CAZyme | HRGMv2_0140_28 | HRGMv2_0140_28_24 | 27348 | 29777 | - | CBM67 | GH78 |
Gene ID: HRGMv2_0140_28_22
Type: TC
Location: 26069 - 26923 (-)
Type: TC
Location: 26069 - 26923 (-)
Gene ID: HRGMv2_0140_28_23
Type: pfam
Location: 26952 - 27203 (-)
Type: pfam
Location: 26952 - 27203 (-)
Gene ID: HRGMv2_0140_28_24
Type: CAZyme
Location: 27348 - 29777 (-)
Type: CAZyme
Location: 27348 - 29777 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_28_23 | vegan > omnivore | 1.27803 | 0.01548 |
| HRGMv2_0140_28_23 | vegetarian > omnivore | 1.08168 | 0.00180 |
| HRGMv2_0140_28_24 | vegetarian > omnivore | 1.41870 | 0.00180 |