Cluster: HRGMv2_0140_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_27 | HRGMv2_0140_27_1 | 2 | 1882 | + | GH95 |
| CAZyme | HRGMv2_0140_27 | HRGMv2_0140_27_2 | 2208 | 4553 | - | GH106 |
| pfam | HRGMv2_0140_27 | HRGMv2_0140_27_3 | 4766 | 5791 | + | URO-D |
| pfam | HRGMv2_0140_27 | HRGMv2_0140_27_4 | 5821 | 6144 | + | rhaM |
| CAZyme | HRGMv2_0140_27 | HRGMv2_0140_27_5 | 6277 | 8646 | - | GH141 |
| TC | HRGMv2_0140_27 | HRGMv2_0140_27_6 | 8768 | 10300 | - | 3.A.1.128.6 |
| sulfatase | HRGMv2_0140_27 | HRGMv2_0140_27_7 | 10361 | 11050 | - | S1_8 |
| CAZyme | HRGMv2_0140_27 | HRGMv2_0140_27_8 | 11066 | 12280 | - | GH97 |
| CAZyme | HRGMv2_0140_27 | HRGMv2_0140_27_9 | 12496 | 13242 | - | CE3 |
Gene ID: HRGMv2_0140_27_1
Type: CAZyme
Location: 2 - 1882 (+)
Type: CAZyme
Location: 2 - 1882 (+)
Gene ID: HRGMv2_0140_27_2
Type: CAZyme
Location: 2208 - 4553 (-)
Type: CAZyme
Location: 2208 - 4553 (-)
Gene ID: HRGMv2_0140_27_3
Type: pfam
Location: 4766 - 5791 (+)
Type: pfam
Location: 4766 - 5791 (+)
Gene ID: HRGMv2_0140_27_4
Type: pfam
Location: 5821 - 6144 (+)
Type: pfam
Location: 5821 - 6144 (+)
Gene ID: HRGMv2_0140_27_5
Type: CAZyme
Location: 6277 - 8646 (-)
Type: CAZyme
Location: 6277 - 8646 (-)
Gene ID: HRGMv2_0140_27_6
Type: TC
Location: 8768 - 10300 (-)
Type: TC
Location: 8768 - 10300 (-)
Gene ID: HRGMv2_0140_27_7
Type: sulfatase
Location: 10361 - 11050 (-)
Type: sulfatase
Location: 10361 - 11050 (-)
Gene ID: HRGMv2_0140_27_8
Type: CAZyme
Location: 11066 - 12280 (-)
Type: CAZyme
Location: 11066 - 12280 (-)
Gene ID: HRGMv2_0140_27_9
Type: CAZyme
Location: 12496 - 13242 (-)
Type: CAZyme
Location: 12496 - 13242 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_27_2 | vegetarian > omnivore | 1.47432 | 0.00180 |
| HRGMv2_0140_27_4 | vegan > omnivore | 1.50662 | 0.01548 |
| HRGMv2_0140_27_4 | vegetarian > omnivore | 1.88379 | 0.00180 |
| HRGMv2_0140_27_6 | vegetarian > omnivore | 1.31766 | 0.00180 |
| HRGMv2_0140_27_7 | vegetarian > omnivore | 1.14322 | 0.00180 |
| HRGMv2_0140_27_9 | vegan > omnivore | 1.30164 | 0.01548 |
| HRGMv2_0140_27_9 | vegetarian > omnivore | 1.30261 | 0.00180 |