Cluster: HRGMv2_0140_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_23 | HRGMv2_0140_23_9 | 8367 | 9779 | - | 2.A.1.14.25 |
| pfam | HRGMv2_0140_23 | HRGMv2_0140_23_10 | 9805 | 10974 | - | URO-D |
| TC | HRGMv2_0140_23 | HRGMv2_0140_23_11 | 11132 | 12088 | - | 8.A.5.1.5 |
| CAZyme | HRGMv2_0140_23 | HRGMv2_0140_23_12 | 12246 | 14684 | + | PL8 |
| CAZyme | HRGMv2_0140_23 | HRGMv2_0140_23_13 | 15014 | 17131 | + | GH141 |
| CAZyme | HRGMv2_0140_23 | HRGMv2_0140_23_14 | 17174 | 18514 | + | GH109 |
| pfam | HRGMv2_0140_23 | HRGMv2_0140_23_15 | 19091 | 20002 | - | NlpE_C |
| peptidase | HRGMv2_0140_23 | HRGMv2_0140_23_16 | 20038 | 22251 | - | M03.UPA |
| TC | HRGMv2_0140_23 | HRGMv2_0140_23_17 | 22258 | 25056 | - | 1.B.42.1.8 |
Gene ID: HRGMv2_0140_23_9
Type: TC
Location: 8367 - 9779 (-)
Type: TC
Location: 8367 - 9779 (-)
Gene ID: HRGMv2_0140_23_10
Type: pfam
Location: 9805 - 10974 (-)
Type: pfam
Location: 9805 - 10974 (-)
Gene ID: HRGMv2_0140_23_11
Type: TC
Location: 11132 - 12088 (-)
Type: TC
Location: 11132 - 12088 (-)
Gene ID: HRGMv2_0140_23_12
Type: CAZyme
Location: 12246 - 14684 (+)
Type: CAZyme
Location: 12246 - 14684 (+)
Gene ID: HRGMv2_0140_23_13
Type: CAZyme
Location: 15014 - 17131 (+)
Type: CAZyme
Location: 15014 - 17131 (+)
Gene ID: HRGMv2_0140_23_14
Type: CAZyme
Location: 17174 - 18514 (+)
Type: CAZyme
Location: 17174 - 18514 (+)
Gene ID: HRGMv2_0140_23_15
Type: pfam
Location: 19091 - 20002 (-)
Type: pfam
Location: 19091 - 20002 (-)
Gene ID: HRGMv2_0140_23_16
Type: peptidase
Location: 20038 - 22251 (-)
Type: peptidase
Location: 20038 - 22251 (-)
Gene ID: HRGMv2_0140_23_17
Type: TC
Location: 22258 - 25056 (-)
Type: TC
Location: 22258 - 25056 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_23_9 | vegetarian > omnivore | 1.35736 | 0.00180 |
| HRGMv2_0140_23_10 | vegetarian > omnivore | 1.54005 | 0.00180 |
| HRGMv2_0140_23_10 | vegetarian > vegan | 1.00665 | 0.01226 |
| HRGMv2_0140_23_11 | vegan > omnivore | 1.60292 | 0.01548 |
| HRGMv2_0140_23_11 | vegetarian > omnivore | 2.54747 | 0.00180 |
| HRGMv2_0140_23_12 | vegetarian > omnivore | 1.61258 | 0.00180 |
| HRGMv2_0140_23_12 | vegetarian > vegan | 1.01161 | 0.01226 |
| HRGMv2_0140_23_13 | vegan > omnivore | 1.06042 | 0.01548 |
| HRGMv2_0140_23_13 | vegetarian > omnivore | 1.68483 | 0.00180 |
| HRGMv2_0140_23_14 | vegan > omnivore | 1.20175 | 0.01548 |
| HRGMv2_0140_23_14 | vegetarian > omnivore | 1.72517 | 0.00180 |
| HRGMv2_0140_23_15 | vegetarian > omnivore | 1.37792 | 0.00180 |
| HRGMv2_0140_23_17 | vegan > omnivore | 1.21988 | 0.01548 |
| HRGMv2_0140_23_17 | vegetarian > omnivore | 1.34560 | 0.00180 |