Cluster: HRGMv2_0140_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_22 | HRGMv2_0140_22_12 | 16451 | 17989 | + | 3.B.1.1.2 |
| TC | HRGMv2_0140_22 | HRGMv2_0140_22_13 | 18375 | 19730 | + | 2.A.81.1.2 |
| TC | HRGMv2_0140_22 | HRGMv2_0140_22_14 | 19988 | 20536 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_0140_22 | HRGMv2_0140_22_15 | 20533 | 21819 | + | GT4 |
| CAZyme | HRGMv2_0140_22 | HRGMv2_0140_22_16 | 21803 | 22921 | + | GT4 |
| pfam | HRGMv2_0140_22 | HRGMv2_0140_22_17 | 22923 | 24455 | + | MatE | MurJ |
| CAZyme | HRGMv2_0140_22 | HRGMv2_0140_22_18 | 24436 | 25725 | + | GT4 |
| CAZyme | HRGMv2_0140_22 | HRGMv2_0140_22_19 | 25802 | 26950 | + | GT4 |
| TC | HRGMv2_0140_22 | HRGMv2_0140_22_20 | 27058 | 28206 | - | 2.A.102.4.10 |
| CAZyme | HRGMv2_0140_22 | HRGMv2_0140_22_21 | 28226 | 30073 | - | GH123 | GH123 |
| NULL(UNKNOWN) | HRGMv2_0140_22 | HRGMv2_0140_22_22 | 30104 | 30298 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0140_22 | HRGMv2_0140_22_23 | 30636 | 33068 | + | GH36 |
Gene ID: HRGMv2_0140_22_12
Type: TC
Location: 16451 - 17989 (+)
Type: TC
Location: 16451 - 17989 (+)
Gene ID: HRGMv2_0140_22_13
Type: TC
Location: 18375 - 19730 (+)
Type: TC
Location: 18375 - 19730 (+)
Gene ID: HRGMv2_0140_22_14
Type: TC
Location: 19988 - 20536 (+)
Type: TC
Location: 19988 - 20536 (+)
Gene ID: HRGMv2_0140_22_15
Type: CAZyme
Location: 20533 - 21819 (+)
Type: CAZyme
Location: 20533 - 21819 (+)
Gene ID: HRGMv2_0140_22_16
Type: CAZyme
Location: 21803 - 22921 (+)
Type: CAZyme
Location: 21803 - 22921 (+)
Gene ID: HRGMv2_0140_22_17
Type: pfam
Location: 22923 - 24455 (+)
Type: pfam
Location: 22923 - 24455 (+)
Gene ID: HRGMv2_0140_22_18
Type: CAZyme
Location: 24436 - 25725 (+)
Type: CAZyme
Location: 24436 - 25725 (+)
Gene ID: HRGMv2_0140_22_19
Type: CAZyme
Location: 25802 - 26950 (+)
Type: CAZyme
Location: 25802 - 26950 (+)
Gene ID: HRGMv2_0140_22_20
Type: TC
Location: 27058 - 28206 (-)
Type: TC
Location: 27058 - 28206 (-)
Gene ID: HRGMv2_0140_22_21
Type: CAZyme
Location: 28226 - 30073 (-)
Type: CAZyme
Location: 28226 - 30073 (-)
Gene ID: HRGMv2_0140_22_22
Type:
Location: 30104 - 30298 (-)
Type:
Location: 30104 - 30298 (-)
Gene ID: HRGMv2_0140_22_23
Type: CAZyme
Location: 30636 - 33068 (+)
Type: CAZyme
Location: 30636 - 33068 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_22_19 | vegan > omnivore | 1.29864 | 0.01548 |
| HRGMv2_0140_22_19 | vegetarian > omnivore | 1.79563 | 0.00180 |
| HRGMv2_0140_22_23 | vegan > omnivore | 1.15196 | 0.01548 |
| HRGMv2_0140_22_23 | vegetarian > omnivore | 1.91583 | 0.00180 |