Cluster: HRGMv2_0140_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_1 | HRGMv2_0140_1_26 | 25681 | 27093 | + | 9.B.145.1.2 |
| pfam | HRGMv2_0140_1 | HRGMv2_0140_1_27 | 27083 | 27862 | + | Inositol_P |
| pfam | HRGMv2_0140_1 | HRGMv2_0140_1_28 | 27862 | 28839 | + | Lip_A_acyltrans |
| CAZyme | HRGMv2_0140_1 | HRGMv2_0140_1_29 | 28927 | 29934 | + | GT27 |
Gene ID: HRGMv2_0140_1_26
Type: TC
Location: 25681 - 27093 (+)
Type: TC
Location: 25681 - 27093 (+)
Gene ID: HRGMv2_0140_1_27
Type: pfam
Location: 27083 - 27862 (+)
Type: pfam
Location: 27083 - 27862 (+)
Gene ID: HRGMv2_0140_1_28
Type: pfam
Location: 27862 - 28839 (+)
Type: pfam
Location: 27862 - 28839 (+)
Gene ID: HRGMv2_0140_1_29
Type: CAZyme
Location: 28927 - 29934 (+)
Type: CAZyme
Location: 28927 - 29934 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_1_26 | vegan > omnivore | 1.25297 | 0.01548 |
| HRGMv2_0140_1_27 | vegetarian > omnivore | 1.19697 | 0.00180 |
| HRGMv2_0140_1_28 | vegetarian > omnivore | 1.26899 | 0.00180 |
| HRGMv2_0140_1_29 | vegetarian > omnivore | 1.22902 | 0.00180 |