Cluster: HRGMv2_0132_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0132_14 | HRGMv2_0132_14_42 | 51293 | 52885 | - | GH20 |
| pfam | HRGMv2_0132_14 | HRGMv2_0132_14_43 | 53176 | 53598 | - | Biotin_lipoyl |
| NULL(UNKNOWN) | HRGMv2_0132_14 | HRGMv2_0132_14_44 | 53648 | 53866 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0132_14 | HRGMv2_0132_14_45 | 53869 | 55431 | - | 3.B.1.1.2 |
Gene ID: HRGMv2_0132_14_42
Type: CAZyme
Location: 51293 - 52885 (-)
Type: CAZyme
Location: 51293 - 52885 (-)
Gene ID: HRGMv2_0132_14_43
Type: pfam
Location: 53176 - 53598 (-)
Type: pfam
Location: 53176 - 53598 (-)
Gene ID: HRGMv2_0132_14_44
Type:
Location: 53648 - 53866 (-)
Type:
Location: 53648 - 53866 (-)
Gene ID: HRGMv2_0132_14_45
Type: TC
Location: 53869 - 55431 (-)
Type: TC
Location: 53869 - 55431 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_14_42 | vegetarian > omnivore | 1.45920 | 0.00430 |
| HRGMv2_0132_14_43 | vegetarian > omnivore | 1.21180 | 0.00430 |