Cluster: HRGMv2_0132_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_09503
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_12 | HRGMv2_0132_12_25 | 34823 | 35692 | - | 9.B.168.1.1 |
| NULL(UNKNOWN) | HRGMv2_0132_12 | HRGMv2_0132_12_26 | 35752 | 36315 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0132_12 | HRGMv2_0132_12_27 | 36255 | 37517 | - | 2.A.55.2.6 |
| TC | HRGMv2_0132_12 | HRGMv2_0132_12_28 | 37773 | 38447 | - | 9.B.20.1.4 |
| pfam | HRGMv2_0132_12 | HRGMv2_0132_12_29 | 39582 | 40451 | - | PseudoU_synth_2 |
| CAZyme | HRGMv2_0132_12 | HRGMv2_0132_12_30 | 40868 | 43105 | + | GH106 |
Gene ID: HRGMv2_0132_12_25
Type: TC
Location: 34823 - 35692 (-)
Type: TC
Location: 34823 - 35692 (-)
Gene ID: HRGMv2_0132_12_26
Type:
Location: 35752 - 36315 (+)
Type:
Location: 35752 - 36315 (+)
Gene ID: HRGMv2_0132_12_27
Type: TC
Location: 36255 - 37517 (-)
Type: TC
Location: 36255 - 37517 (-)
Gene ID: HRGMv2_0132_12_28
Type: TC
Location: 37773 - 38447 (-)
Type: TC
Location: 37773 - 38447 (-)
Gene ID: HRGMv2_0132_12_29
Type: pfam
Location: 39582 - 40451 (-)
Type: pfam
Location: 39582 - 40451 (-)
Gene ID: HRGMv2_0132_12_30
Type: CAZyme
Location: 40868 - 43105 (+)
Type: CAZyme
Location: 40868 - 43105 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_12_25 | vegan > omnivore | 1.07092 | 0.03281 |
| HRGMv2_0132_12_25 | vegetarian > omnivore | 1.29602 | 0.00430 |
| HRGMv2_0132_12_26 | vegetarian > omnivore | 1.00618 | 0.00430 |
| HRGMv2_0132_12_28 | vegetarian > omnivore | 2.03334 | 0.00430 |
| HRGMv2_0132_12_28 | vegetarian > vegan | 1.16108 | 0.00406 |
| HRGMv2_0132_12_29 | vegetarian > omnivore | 1.22483 | 0.00430 |
| HRGMv2_0132_12_30 | vegetarian > omnivore | 1.15340 | 0.00430 |