Cluster: HRGMv2_0132_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_00915
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_11 | HRGMv2_0132_11_1 | 2 | 214 | + | 3.A.2.1.5 |
| pfam | HRGMv2_0132_11 | HRGMv2_0132_11_2 | 211 | 447 | + | ATP-synt_DE_N |
| NULL(UNKNOWN) | HRGMv2_0132_11 | HRGMv2_0132_11_3 | 481 | 894 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0132_11 | HRGMv2_0132_11_4 | 887 | 1963 | + | 3.A.2.1.7 |
| TC | HRGMv2_0132_11 | HRGMv2_0132_11_5 | 2093 | 2341 | + | 3.A.2.1.6 |
| pfam | HRGMv2_0132_11 | HRGMv2_0132_11_6 | 2357 | 2857 | + | ATP-synt_B |
| pfam | HRGMv2_0132_11 | HRGMv2_0132_11_7 | 2862 | 3416 | + | OSCP |
| TC | HRGMv2_0132_11 | HRGMv2_0132_11_8 | 3458 | 5038 | + | 3.A.2.1.2 |
| TC | HRGMv2_0132_11 | HRGMv2_0132_11_9 | 5042 | 5911 | + | 3.A.2.1.5 |
| TC | HRGMv2_0132_11 | HRGMv2_0132_11_10 | 6400 | 7974 | + | 9.A.25.1.1 |
| CAZyme | HRGMv2_0132_11 | HRGMv2_0132_11_11 | 8032 | 9411 | + | GH177 |
Gene ID: HRGMv2_0132_11_1
Type: TC
Location: 2 - 214 (+)
Type: TC
Location: 2 - 214 (+)
Gene ID: HRGMv2_0132_11_2
Type: pfam
Location: 211 - 447 (+)
Type: pfam
Location: 211 - 447 (+)
Gene ID: HRGMv2_0132_11_3
Type:
Location: 481 - 894 (+)
Type:
Location: 481 - 894 (+)
Gene ID: HRGMv2_0132_11_4
Type: TC
Location: 887 - 1963 (+)
Type: TC
Location: 887 - 1963 (+)
Gene ID: HRGMv2_0132_11_5
Type: TC
Location: 2093 - 2341 (+)
Type: TC
Location: 2093 - 2341 (+)
Gene ID: HRGMv2_0132_11_6
Type: pfam
Location: 2357 - 2857 (+)
Type: pfam
Location: 2357 - 2857 (+)
Gene ID: HRGMv2_0132_11_7
Type: pfam
Location: 2862 - 3416 (+)
Type: pfam
Location: 2862 - 3416 (+)
Gene ID: HRGMv2_0132_11_8
Type: TC
Location: 3458 - 5038 (+)
Type: TC
Location: 3458 - 5038 (+)
Gene ID: HRGMv2_0132_11_9
Type: TC
Location: 5042 - 5911 (+)
Type: TC
Location: 5042 - 5911 (+)
Gene ID: HRGMv2_0132_11_10
Type: TC
Location: 6400 - 7974 (+)
Type: TC
Location: 6400 - 7974 (+)
Gene ID: HRGMv2_0132_11_11
Type: CAZyme
Location: 8032 - 9411 (+)
Type: CAZyme
Location: 8032 - 9411 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_11_2 | vegan > omnivore | 1.04362 | 0.03281 |
| HRGMv2_0132_11_2 | vegetarian > omnivore | 1.53530 | 0.00430 |
| HRGMv2_0132_11_3 | vegan > omnivore | 1.19236 | 0.03281 |
| HRGMv2_0132_11_3 | vegetarian > omnivore | 1.64476 | 0.00430 |
| HRGMv2_0132_11_5 | vegetarian > omnivore | 1.33679 | 0.00430 |
| HRGMv2_0132_11_6 | vegetarian > omnivore | 1.20466 | 0.00430 |
| HRGMv2_0132_11_7 | vegetarian > omnivore | 1.33424 | 0.00430 |
| HRGMv2_0132_11_9 | vegetarian > omnivore | 1.43029 | 0.00430 |
| HRGMv2_0132_11_9 | vegetarian > vegan | 1.01949 | 0.00406 |
| HRGMv2_0132_11_11 | vegetarian > omnivore | 1.08816 | 0.00430 |