Cluster: HRGMv2_0132_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_09502
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_10 | HRGMv2_0132_10_1 | 3 | 1394 | - | 3.A.2.1.7 |
| TF | HRGMv2_0132_10 | HRGMv2_0132_10_2 | 1572 | 2450 | + | HTH_AraC |
| STP | HRGMv2_0132_10 | HRGMv2_0132_10_3 | 2577 | 3305 | - | Pribosyltran |
| TC | HRGMv2_0132_10 | HRGMv2_0132_10_4 | 3901 | 6186 | - | 3.A.11.3.1 |
| TC | HRGMv2_0132_10 | HRGMv2_0132_10_5 | 6415 | 7311 | + | 2.A.115.1.5 |
| TC | HRGMv2_0132_10 | HRGMv2_0132_10_6 | 7722 | 8936 | + | 2.A.23.2.1 |
| CAZyme | HRGMv2_0132_10 | HRGMv2_0132_10_7 | 9196 | 11190 | + | GH127 |
Gene ID: HRGMv2_0132_10_1
Type: TC
Location: 3 - 1394 (-)
Type: TC
Location: 3 - 1394 (-)
Gene ID: HRGMv2_0132_10_2
Type: TF
Location: 1572 - 2450 (+)
Type: TF
Location: 1572 - 2450 (+)
Gene ID: HRGMv2_0132_10_3
Type: STP
Location: 2577 - 3305 (-)
Type: STP
Location: 2577 - 3305 (-)
Gene ID: HRGMv2_0132_10_4
Type: TC
Location: 3901 - 6186 (-)
Type: TC
Location: 3901 - 6186 (-)
Gene ID: HRGMv2_0132_10_5
Type: TC
Location: 6415 - 7311 (+)
Type: TC
Location: 6415 - 7311 (+)
Gene ID: HRGMv2_0132_10_6
Type: TC
Location: 7722 - 8936 (+)
Type: TC
Location: 7722 - 8936 (+)
Gene ID: HRGMv2_0132_10_7
Type: CAZyme
Location: 9196 - 11190 (+)
Type: CAZyme
Location: 9196 - 11190 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_10_2 | vegan > omnivore | 2.17020 | 0.02650 |
| HRGMv2_0132_10_2 | vegetarian > omnivore | 1.58528 | 0.00430 |
| HRGMv2_0132_10_3 | vegetarian > omnivore | 1.40190 | 0.00430 |
| HRGMv2_0132_10_3 | vegetarian > vegan | 1.08322 | 0.00406 |
| HRGMv2_0132_10_5 | vegetarian > omnivore | 1.19168 | 0.00430 |
| HRGMv2_0132_10_6 | vegetarian > omnivore | 1.04336 | 0.00430 |