Cluster: HRGMv2_0132_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_09501
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0132_8 | HRGMv2_0132_8_15 | 19137 | 20894 | + | GH13_31 |
| TC | HRGMv2_0132_8 | HRGMv2_0132_8_16 | 21038 | 21364 | - | 2.A.7.1.5 |
| STP | HRGMv2_0132_8 | HRGMv2_0132_8_17 | 21454 | 22017 | - | cNMP_binding |
| pfam | HRGMv2_0132_8 | HRGMv2_0132_8_18 | 22535 | 23098 | + | Lipocalin_3 |
| TC | HRGMv2_0132_8 | HRGMv2_0132_8_19 | 23282 | 24022 | - | 1.A.8.2.9 |
Gene ID: HRGMv2_0132_8_15
Type: CAZyme
Location: 19137 - 20894 (+)
Type: CAZyme
Location: 19137 - 20894 (+)
Gene ID: HRGMv2_0132_8_16
Type: TC
Location: 21038 - 21364 (-)
Type: TC
Location: 21038 - 21364 (-)
Gene ID: HRGMv2_0132_8_17
Type: STP
Location: 21454 - 22017 (-)
Type: STP
Location: 21454 - 22017 (-)
Gene ID: HRGMv2_0132_8_18
Type: pfam
Location: 22535 - 23098 (+)
Type: pfam
Location: 22535 - 23098 (+)
Gene ID: HRGMv2_0132_8_19
Type: TC
Location: 23282 - 24022 (-)
Type: TC
Location: 23282 - 24022 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_8_16 | vegan > omnivore | 1.02116 | 0.03281 |
| HRGMv2_0132_8_17 | vegan > omnivore | 1.22099 | 0.03281 |
| HRGMv2_0132_8_18 | vegan > omnivore | 1.22571 | 0.03281 |
| HRGMv2_0132_8_18 | vegetarian > omnivore | 1.51941 | 0.00430 |
| HRGMv2_0132_8_19 | vegetarian > omnivore | 1.10769 | 0.00430 |