Cluster: HRGMv2_0132_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_05568
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0132_78 | HRGMv2_0132_78_1 | 3 | 1349 | - | CE20 |
| CAZyme | HRGMv2_0132_78 | HRGMv2_0132_78_2 | 1427 | 2857 | - | CE20 |
| CAZyme | HRGMv2_0132_78 | HRGMv2_0132_78_3 | 2905 | 4326 | - | CE20 |
| TC | HRGMv2_0132_78 | HRGMv2_0132_78_4 | 4461 | 5558 | - | 2.A.86.1.8 |
Gene ID: HRGMv2_0132_78_1
Type: CAZyme
Location: 3 - 1349 (-)
Type: CAZyme
Location: 3 - 1349 (-)
Gene ID: HRGMv2_0132_78_2
Type: CAZyme
Location: 1427 - 2857 (-)
Type: CAZyme
Location: 1427 - 2857 (-)
Gene ID: HRGMv2_0132_78_3
Type: CAZyme
Location: 2905 - 4326 (-)
Type: CAZyme
Location: 2905 - 4326 (-)
Gene ID: HRGMv2_0132_78_4
Type: TC
Location: 4461 - 5558 (-)
Type: TC
Location: 4461 - 5558 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_78_3 | vegan > omnivore | 1.10256 | 0.03281 |
| HRGMv2_0132_78_3 | vegetarian > omnivore | 1.29852 | 0.00430 |