Cluster: HRGMv2_0132_CGC28
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_05939
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_58 | HRGMv2_0132_58_7 | 8574 | 10937 | - | 9.B.14.3.1 |
| pfam | HRGMv2_0132_58 | HRGMv2_0132_58_8 | 11257 | 11979 | - | SIR2 |
| CAZyme | HRGMv2_0132_58 | HRGMv2_0132_58_9 | 12347 | 13228 | + | GH13_14 |
Gene ID: HRGMv2_0132_58_7
Type: TC
Location: 8574 - 10937 (-)
Type: TC
Location: 8574 - 10937 (-)
Gene ID: HRGMv2_0132_58_8
Type: pfam
Location: 11257 - 11979 (-)
Type: pfam
Location: 11257 - 11979 (-)
Gene ID: HRGMv2_0132_58_9
Type: CAZyme
Location: 12347 - 13228 (+)
Type: CAZyme
Location: 12347 - 13228 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_58_7 | vegetarian > omnivore | 1.26748 | 0.00430 |
| HRGMv2_0132_58_9 | vegetarian > omnivore | 1.20369 | 0.00430 |