Cluster: HRGMv2_0132_CGC27
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_05939
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0132_55 | HRGMv2_0132_55_1 | 2 | 964 | + | GH13_14 |
| pfam | HRGMv2_0132_55 | HRGMv2_0132_55_2 | 1263 | 1940 | + | Hydrolase | HAD_2 |
| TC | HRGMv2_0132_55 | HRGMv2_0132_55_3 | 2102 | 2800 | - | 1.B.44.2.1 |
Gene ID: HRGMv2_0132_55_1
Type: CAZyme
Location: 2 - 964 (+)
Type: CAZyme
Location: 2 - 964 (+)
Gene ID: HRGMv2_0132_55_2
Type: pfam
Location: 1263 - 1940 (+)
Type: pfam
Location: 1263 - 1940 (+)
Gene ID: HRGMv2_0132_55_3
Type: TC
Location: 2102 - 2800 (-)
Type: TC
Location: 2102 - 2800 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_55_1 | vegetarian > omnivore | 1.23742 | 0.00430 |
| HRGMv2_0132_55_1 | vegetarian > vegan | 1.19094 | 0.00406 |
| HRGMv2_0132_55_2 | vegetarian > omnivore | 1.13482 | 0.00430 |
| HRGMv2_0132_55_3 | vegan > omnivore | 1.15723 | 0.03281 |
| HRGMv2_0132_55_3 | vegetarian > omnivore | 1.42074 | 0.00430 |