Cluster: HRGMv2_0132_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_09500
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_47 | HRGMv2_0132_47_3 | 4090 | 5562 | - | 3.A.1.32.3 |
| NULL(UNKNOWN) | HRGMv2_0132_47 | HRGMv2_0132_47_4 | 5640 | 6161 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0132_47 | HRGMv2_0132_47_5 | 6130 | 7455 | - | CE7 |
| peptidase | HRGMv2_0132_47 | HRGMv2_0132_47_6 | 7726 | 8622 | - | S09.UPW |
| STP | HRGMv2_0132_47 | HRGMv2_0132_47_7 | 8699 | 9334 | + | Nitroreductase |
| TC | HRGMv2_0132_47 | HRGMv2_0132_47_8 | 9331 | 11238 | + | 2.A.16.2.2 |
Gene ID: HRGMv2_0132_47_3
Type: TC
Location: 4090 - 5562 (-)
Type: TC
Location: 4090 - 5562 (-)
Gene ID: HRGMv2_0132_47_4
Type:
Location: 5640 - 6161 (+)
Type:
Location: 5640 - 6161 (+)
Gene ID: HRGMv2_0132_47_5
Type: CAZyme
Location: 6130 - 7455 (-)
Type: CAZyme
Location: 6130 - 7455 (-)
Gene ID: HRGMv2_0132_47_6
Type: peptidase
Location: 7726 - 8622 (-)
Type: peptidase
Location: 7726 - 8622 (-)
Gene ID: HRGMv2_0132_47_7
Type: STP
Location: 8699 - 9334 (+)
Type: STP
Location: 8699 - 9334 (+)
Gene ID: HRGMv2_0132_47_8
Type: TC
Location: 9331 - 11238 (+)
Type: TC
Location: 9331 - 11238 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_47_3 | vegetarian > omnivore | 1.16443 | 0.00430 |
| HRGMv2_0132_47_4 | vegetarian > omnivore | 1.70084 | 0.00430 |
| HRGMv2_0132_47_4 | vegetarian > vegan | 1.10645 | 0.00406 |
| HRGMv2_0132_47_5 | vegetarian > omnivore | 1.35547 | 0.00430 |