Cluster: HRGMv2_0132_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0132_37 | HRGMv2_0132_37_6 | 8644 | 10029 | + | GH23 |
| TC | HRGMv2_0132_37 | HRGMv2_0132_37_7 | 10238 | 11035 | - | 1.A.16.2.1 |
| pfam | HRGMv2_0132_37 | HRGMv2_0132_37_8 | 11352 | 11924 | + | Ribosomal_S16 |
| pfam | HRGMv2_0132_37 | HRGMv2_0132_37_9 | 11938 | 12468 | + | PRC_RimM |
| TC | HRGMv2_0132_37 | HRGMv2_0132_37_10 | 13011 | 16358 | + | 1.B.14.6.2 |
Gene ID: HRGMv2_0132_37_6
Type: CAZyme
Location: 8644 - 10029 (+)
Type: CAZyme
Location: 8644 - 10029 (+)
Gene ID: HRGMv2_0132_37_7
Type: TC
Location: 10238 - 11035 (-)
Type: TC
Location: 10238 - 11035 (-)
Gene ID: HRGMv2_0132_37_8
Type: pfam
Location: 11352 - 11924 (+)
Type: pfam
Location: 11352 - 11924 (+)
Gene ID: HRGMv2_0132_37_9
Type: pfam
Location: 11938 - 12468 (+)
Type: pfam
Location: 11938 - 12468 (+)
Gene ID: HRGMv2_0132_37_10
Type: TC
Location: 13011 - 16358 (+)
Type: TC
Location: 13011 - 16358 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_37_6 | vegetarian > omnivore | 1.27515 | 0.00430 |
| HRGMv2_0132_37_8 | vegetarian > omnivore | 1.32073 | 0.00430 |
| HRGMv2_0132_37_8 | vegetarian > vegan | 1.17818 | 0.00406 |
| HRGMv2_0132_37_9 | vegetarian > omnivore | 1.15251 | 0.00430 |