Cluster: HRGMv2_0132_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_01376
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_35 | HRGMv2_0132_35_12 | 10774 | 11709 | + | 1.A.23.2.1 |
| NULL(UNKNOWN) | HRGMv2_0132_35 | HRGMv2_0132_35_13 | 11735 | 12427 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0132_35 | HRGMv2_0132_35_14 | 12354 | 15560 | - | GH106 |
| NULL(UNKNOWN) | HRGMv2_0132_35 | HRGMv2_0132_35_15 | 15607 | 15975 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0132_35 | HRGMv2_0132_35_16 | 16158 | 17843 | + | 2.A.81.1.2 |
Gene ID: HRGMv2_0132_35_12
Type: TC
Location: 10774 - 11709 (+)
Type: TC
Location: 10774 - 11709 (+)
Gene ID: HRGMv2_0132_35_13
Type:
Location: 11735 - 12427 (+)
Type:
Location: 11735 - 12427 (+)
Gene ID: HRGMv2_0132_35_14
Type: CAZyme
Location: 12354 - 15560 (-)
Type: CAZyme
Location: 12354 - 15560 (-)
Gene ID: HRGMv2_0132_35_15
Type:
Location: 15607 - 15975 (-)
Type:
Location: 15607 - 15975 (-)
Gene ID: HRGMv2_0132_35_16
Type: TC
Location: 16158 - 17843 (+)
Type: TC
Location: 16158 - 17843 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_35_12 | vegetarian > omnivore | 1.01253 | 0.00430 |
| HRGMv2_0132_35_13 | vegetarian > omnivore | 1.02753 | 0.00430 |