Cluster: HRGMv2_0132_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_02163
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0132_31 | HRGMv2_0132_31_3 | 1903 | 4791 | + | CBM67 | GH78 |
| pfam | HRGMv2_0132_31 | HRGMv2_0132_31_4 | 5006 | 5905 | + | Big_14 |
| TC | HRGMv2_0132_31 | HRGMv2_0132_31_5 | 6376 | 8352 | + | 2.A.67.4.2 |
| peptidase | HRGMv2_0132_31 | HRGMv2_0132_31_6 | 8588 | 9817 | + | M20.003 |
| TF | HRGMv2_0132_31 | HRGMv2_0132_31_7 | 10096 | 10503 | + | Rrf2 |
| TC | HRGMv2_0132_31 | HRGMv2_0132_31_8 | 10948 | 12459 | + | 2.A.21.3.7 |
Gene ID: HRGMv2_0132_31_3
Type: CAZyme
Location: 1903 - 4791 (+)
Type: CAZyme
Location: 1903 - 4791 (+)
Gene ID: HRGMv2_0132_31_4
Type: pfam
Location: 5006 - 5905 (+)
Type: pfam
Location: 5006 - 5905 (+)
Gene ID: HRGMv2_0132_31_5
Type: TC
Location: 6376 - 8352 (+)
Type: TC
Location: 6376 - 8352 (+)
Gene ID: HRGMv2_0132_31_6
Type: peptidase
Location: 8588 - 9817 (+)
Type: peptidase
Location: 8588 - 9817 (+)
Gene ID: HRGMv2_0132_31_7
Type: TF
Location: 10096 - 10503 (+)
Type: TF
Location: 10096 - 10503 (+)
Gene ID: HRGMv2_0132_31_8
Type: TC
Location: 10948 - 12459 (+)
Type: TC
Location: 10948 - 12459 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_31_3 | vegetarian > omnivore | 1.04860 | 0.00430 |
| HRGMv2_0132_31_4 | vegetarian > omnivore | 1.35526 | 0.00430 |
| HRGMv2_0132_31_7 | vegan > omnivore | 1.17554 | 0.03281 |
| HRGMv2_0132_31_7 | vegetarian > omnivore | 1.50554 | 0.00430 |