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Cluster: HRGMv2_0132_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0132_1 HRGMv2_0132_1_44 59074 60207 - GT28
TC HRGMv2_0132_1 HRGMv2_0132_1_45 60383 61705 - 2.A.103.1.3
pfam HRGMv2_0132_1 HRGMv2_0132_1_46 61956 63302 - Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N
TC HRGMv2_0132_1 HRGMv2_0132_1_47 63305 64552 - 9.B.146.1.6
NULL(UNKNOWN) HRGMv2_0132_1 HRGMv2_0132_1_48 64567 66132 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0132_1 HRGMv2_0132_1_49 66150 67598 - Mur_ligase | Mur_ligase_C | Mur_ligase_M
TC HRGMv2_0132_1 HRGMv2_0132_1_50 67711 69987 - 2.A.37.1.5
Gene ID: HRGMv2_0132_1_44
Type: CAZyme
Location: 59074 - 60207 (-)
Gene ID: HRGMv2_0132_1_45
Type: TC
Location: 60383 - 61705 (-)
Gene ID: HRGMv2_0132_1_46
Type: pfam
Location: 61956 - 63302 (-)
Gene ID: HRGMv2_0132_1_47
Type: TC
Location: 63305 - 64552 (-)
Gene ID: HRGMv2_0132_1_48
Type:
Location: 64567 - 66132 (-)
Gene ID: HRGMv2_0132_1_49
Type: pfam
Location: 66150 - 67598 (-)
Gene ID: HRGMv2_0132_1_50
Type: TC
Location: 67711 - 69987 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0132_1_45 vegetarian > omnivore 1.31716 0.00430
HRGMv2_0132_1_50 vegetarian > omnivore 1.40572 0.00430

🧭 Explore Read Mapping of CGC

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