Cluster: HRGMv2_0132_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_19 | HRGMv2_0132_19_27 | 34427 | 36892 | - | 2.A.21.9.2 |
| NULL(UNKNOWN) | HRGMv2_0132_19 | HRGMv2_0132_19_28 | 37154 | 39190 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0132_19 | HRGMv2_0132_19_29 | 39679 | 41664 | - | CE20 | CE20 |
Gene ID: HRGMv2_0132_19_27
Type: TC
Location: 34427 - 36892 (-)
Type: TC
Location: 34427 - 36892 (-)
Gene ID: HRGMv2_0132_19_28
Type:
Location: 37154 - 39190 (+)
Type:
Location: 37154 - 39190 (+)
Gene ID: HRGMv2_0132_19_29
Type: CAZyme
Location: 39679 - 41664 (-)
Type: CAZyme
Location: 39679 - 41664 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_19_28 | vegan > omnivore | 1.38187 | 0.03281 |
| HRGMv2_0132_19_29 | vegetarian > omnivore | 1.29002 | 0.00430 |
| HRGMv2_0132_19_29 | vegetarian > vegan | 1.35830 | 0.00406 |