Cluster: HRGMv2_0132_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_03645
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_17 | HRGMv2_0132_17_5 | 4713 | 5894 | - | 2.A.1.7.17 |
| pfam | HRGMv2_0132_17 | HRGMv2_0132_17_6 | 5933 | 7030 | - | MMR_HSR1 | FeoB_N | YchF-GTPase_C |
| CAZyme | HRGMv2_0132_17 | HRGMv2_0132_17_7 | 7206 | 7832 | + | GT32 |
| pfam | HRGMv2_0132_17 | HRGMv2_0132_17_8 | 7897 | 8778 | + | Glyco_tranf_2_5 |
| CAZyme | HRGMv2_0132_17 | HRGMv2_0132_17_9 | 9387 | 11726 | - | CBM67 | GH78 |
Gene ID: HRGMv2_0132_17_5
Type: TC
Location: 4713 - 5894 (-)
Type: TC
Location: 4713 - 5894 (-)
Gene ID: HRGMv2_0132_17_6
Type: pfam
Location: 5933 - 7030 (-)
Type: pfam
Location: 5933 - 7030 (-)
Gene ID: HRGMv2_0132_17_7
Type: CAZyme
Location: 7206 - 7832 (+)
Type: CAZyme
Location: 7206 - 7832 (+)
Gene ID: HRGMv2_0132_17_8
Type: pfam
Location: 7897 - 8778 (+)
Type: pfam
Location: 7897 - 8778 (+)
Gene ID: HRGMv2_0132_17_9
Type: CAZyme
Location: 9387 - 11726 (-)
Type: CAZyme
Location: 9387 - 11726 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_17_7 | vegetarian > omnivore | 1.44766 | 0.00430 |
| HRGMv2_0132_17_8 | vegetarian > omnivore | 1.04381 | 0.00430 |