Cluster: HRGMv2_0132_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_01217
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0132_16 | HRGMv2_0132_16_19 | 24124 | 24879 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_0132_16 | HRGMv2_0132_16_20 | 25317 | 25604 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0132_16 | HRGMv2_0132_16_21 | 25745 | 26218 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0132_16 | HRGMv2_0132_16_22 | 26215 | 27555 | + | 2.A.38.1.1 |
| pfam | HRGMv2_0132_16 | HRGMv2_0132_16_23 | 27605 | 29128 | + | GH3 | GH3 | GH3_M | GH3_C |
| CAZyme | HRGMv2_0132_16 | HRGMv2_0132_16_24 | 29125 | 30300 | + | GT4 |
Gene ID: HRGMv2_0132_16_19
Type: CAZyme
Location: 24124 - 24879 (-)
Type: CAZyme
Location: 24124 - 24879 (-)
Gene ID: HRGMv2_0132_16_20
Type:
Location: 25317 - 25604 (-)
Type:
Location: 25317 - 25604 (-)
Gene ID: HRGMv2_0132_16_21
Type:
Location: 25745 - 26218 (+)
Type:
Location: 25745 - 26218 (+)
Gene ID: HRGMv2_0132_16_22
Type: TC
Location: 26215 - 27555 (+)
Type: TC
Location: 26215 - 27555 (+)
Gene ID: HRGMv2_0132_16_23
Type: pfam
Location: 27605 - 29128 (+)
Type: pfam
Location: 27605 - 29128 (+)
Gene ID: HRGMv2_0132_16_24
Type: CAZyme
Location: 29125 - 30300 (+)
Type: CAZyme
Location: 29125 - 30300 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_16_19 | vegetarian > omnivore | 1.58285 | 0.00430 |
| HRGMv2_0132_16_20 | vegetarian > omnivore | 1.31115 | 0.00430 |