Cluster: HRGMv2_0132_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0132
- CGC Family ID: CGCFAM_09369
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0132_16 | HRGMv2_0132_16_11 | 12141 | 14483 | + | 9.B.14.3.1 |
| NULL(UNKNOWN) | HRGMv2_0132_16 | HRGMv2_0132_16_12 | 14682 | 15491 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0132_16 | HRGMv2_0132_16_13 | 15744 | 16301 | - | Hexapep |
| CAZyme | HRGMv2_0132_16 | HRGMv2_0132_16_14 | 16453 | 17157 | - | GT51 |
Gene ID: HRGMv2_0132_16_11
Type: TC
Location: 12141 - 14483 (+)
Type: TC
Location: 12141 - 14483 (+)
Gene ID: HRGMv2_0132_16_12
Type:
Location: 14682 - 15491 (+)
Type:
Location: 14682 - 15491 (+)
Gene ID: HRGMv2_0132_16_13
Type: pfam
Location: 15744 - 16301 (-)
Type: pfam
Location: 15744 - 16301 (-)
Gene ID: HRGMv2_0132_16_14
Type: CAZyme
Location: 16453 - 17157 (-)
Type: CAZyme
Location: 16453 - 17157 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp902491835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0132_16_11 | vegetarian > omnivore | 1.07347 | 0.00430 |
| HRGMv2_0132_16_12 | vegan > omnivore | 1.08302 | 0.03281 |
| HRGMv2_0132_16_12 | vegetarian > omnivore | 1.47412 | 0.00430 |
| HRGMv2_0132_16_13 | vegetarian > omnivore | 1.43445 | 0.00430 |
| HRGMv2_0132_16_14 | vegan > omnivore | 1.01370 | 0.03281 |
| HRGMv2_0132_16_14 | vegetarian > omnivore | 1.02466 | 0.00430 |