Cluster: HRGMv2_0130_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0130
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0130_7 | HRGMv2_0130_7_102 | 120231 | 122465 | - | GH3 |
| pfam | HRGMv2_0130_7 | HRGMv2_0130_7_103 | 122545 | 124575 | - | DUF5016 | DUF5125 | DUF5125 | DUF5121 | DUF5121 |
| CAZyme | HRGMv2_0130_7 | HRGMv2_0130_7_104 | 124595 | 126109 | - | GH30_3 |
| pfam | HRGMv2_0130_7 | HRGMv2_0130_7_105 | 126130 | 127674 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0130_7 | HRGMv2_0130_7_106 | 127696 | 130731 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0130_7_102
Type: CAZyme
Location: 120231 - 122465 (-)
Type: CAZyme
Location: 120231 - 122465 (-)
Gene ID: HRGMv2_0130_7_103
Type: pfam
Location: 122545 - 124575 (-)
Type: pfam
Location: 122545 - 124575 (-)
Gene ID: HRGMv2_0130_7_104
Type: CAZyme
Location: 124595 - 126109 (-)
Type: CAZyme
Location: 124595 - 126109 (-)
Gene ID: HRGMv2_0130_7_105
Type: pfam
Location: 126130 - 127674 (-)
Type: pfam
Location: 126130 - 127674 (-)
Gene ID: HRGMv2_0130_7_106
Type: TC
Location: 127696 - 130731 (-)
Type: TC
Location: 127696 - 130731 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900541585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.